Table 2 Length and position of genes in the mitochondrial genomes of Xenopus
From: Next generation sequencing and comparative analyses of Xenopus mitogenomes
Xenopus laevis | Silurana (X.) tropicalis | X. borealis | X. victorianus | ||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Feature | Description | Position | Length | Start/Stop | A (%) | C (%) | G (%) | T (%) | Position | Length | Start/Stop | A (%) | C (%) | G (%) | T (%) | Position | Length | Start/Stop | A (%) | C (%) | G (%) | T (%) | Position | Length | Start/Stop | A (%) | C (%) | G (%) | T (%) | ||||
(nt) | (nt) | (nt) | (nt) | (nt) | (nt) | (nt) | (nt) | ||||||||||||||||||||||||||
tRNA | Phe | 1 | 69 | 69 | 33.3 | 23.2 | 24.6 | 18.9 | 1 | 68 | 68 | 38.2 | 22.1 | 22.1 | 17.6 | 1 | 68 | 68 | 36.8 | 22.1 | 23.5 | 17.6 | 1 | 68 | 68 | 36.8 | 22.1 | 23.5 | 17.6 | ||||
rRNA | rrnS | 70 | 888 | 819 | 32.5 | 25.5 | 19.9 | 22.1 | 69 | 1011 | 943 | 32.7 | 27.8 | 20.0 | 19.5 | 69 | 1015 | 947 | 32.2 | 25.0 | 19.6 | 23.2 | 69 | 1016 | 948 | 32.3 | 25.9 | 19.6 | 22.2 | ||||
tRNA | Val | 889 | 957 | 69 | 34.8 | 24.6 | 13.0 | 27.6 | 1012 | 1081 | 70 | 32.9 | 28.6 | 14.3 | 24.2 | 1016 | 1085 | 70 | 32.9 | 24.3 | 14.3 | 28.5 | 1017 | 1085 | 69 | 33.3 | 23.2 | 14.5 | 29.0 | ||||
rRNA | rrnL | 958 | 2588 | 1631 | 36.4 | 21.0 | 17.7 | 24.9 | 1082 | 2716 | 1635 | 34.9 | 24.1 | 18.5 | 22.5 | 1086 | 2720 | 1635 | 36.5 | 19.6 | 18.2 | 25.7 | 1086 | 2720 | 1635 | 37.1 | 21.4 | 17.7 | 23.8 | ||||
tRNA | Lee (UUR) | 2589 | 2663 | 75 | 24.0 | 26.7 | 24.0 | 25.3 | 2717 | 2791 | 75 | 25.3 | 25.3 | 22.7 | 26.7 | 2721 | 2795 | 75 | 25.3 | 26.7 | 22.7 | 25.3 | 2722 | 2796 | 75 | 21.3 | 29.3 | 25.3 | 24.1 | ||||
Gene | nad1 | 2664 | 3635 | 972 | ATG/TAG | 31.6 | 24.9 | 12.3 | 31.2 | 2792 | 3759 | 968 | ATG/TAG | 28.0 | 30.0 | 13.7 | 28.3 | 2796 | 3764 | 969 | ATG/TAG | 29.1 | 21.3 | 15.3 | 34.3 | 2801 | 3769 | 969 | ATG/TAG | 30.5 | 26.5 | 12.4 | 30.6 |
tRNA | Ile | 3635 | 3705 | 71 | 31.0 | 21.1 | 22.5 | 25.4 | 3760 | 3830 | 71 | 28.2 | 23.9 | 25.4 | 22.5 | 3764 | 3834 | 71 | 31.0 | 21.1 | 22.5 | 25.4 | 3769 | 3839 | 71 | 31.0 | 22.5 | 22.5 | 24.0 | ||||
tRNA | Gln [C] | 3705 | 3775 | 71 | 21.1 | 14.1 | 31.0 | 33.8 | 3830 | 3900 | 71 | 21.1 | 14.1 | 31.0 | 33.8 | 3834 | 3904 | 71 | 21.1 | 12.7 | 31.0 | 35.2 | 3840 | 3909 | 70 | 20.0 | 14.3 | 13.4 | 52.3 | ||||
tRNA | Met | 3775 | 3843 | 69 | 31.9 | 26.1 | 14.5 | 27.5 | 3900 | 3968 | 69 | 31.9 | 24.6 | 14.5 | 29.0 | 3904 | 3972 | 69 | 33.3 | 23.2 | 14.5 | 29.0 | 3909 | 3977 | 69 | 31.9 | 26.1 | 14.5 | 27.5 | ||||
Gene | nad2 | 3844 | 4881 | 1038 | ATG/TAG | 31.8 | 26.9 | 10.2 | 31.1 | 3969 | 5004 | 1036 | ATG/TAG | 29.5 | 33.3 | 9.7 | 27.5 | 3973 | 5010 | 1038 | ATG/TAG | 31.5 | 24.2 | 11.4 | 32.9 | 3978 | 5015 | 1038 | ATG/TAG | 32.2 | 27.5 | 9.3 | 31.0 |
tRNA | Trp | 4880 | 4948 | 69 | 36.2 | 28.3 | 18.8 | 16.7 | 5005 | 5073 | 69 | 33.3 | 23.2 | 23.2 | 20.3 | 5009 | 5077 | 69 | 36.2 | 20.3 | 17.4 | 26.1 | 5014 | 5082 | 69 | 36.2 | 21.7 | 17.4 | 24.7 | ||||
tRNA | Ala [C] | 4951 | 5019 | 69 | 30.4 | 13.0 | 20.3 | 36.3 | 5077 | 5145 | 69 | 29.0 | 13.0 | 21.7 | 36.3 | 5084 | 5154 | 71 | 31.0 | 11.3 | 19.7 | 38.0 | 5084 | 5154 | 71 | 28.2 | 12.7 | 23.9 | 35.2 | ||||
tRNA | Asn [C] | 5021 | 5091 | 71 | 23.9 | 15.5 | 28.2 | 32.4 | 5147 | 5219 | 73 | 24.7 | 17.8 | 26.0 | 31.5 | 5154 | 5228 | 75 | 25.3 | 20.0 | 26.7 | 28.0 | 5154 | 5228 | 75 | 24.0 | 16.0 | 30.7 | 29.3 | ||||
tRNA | Cys [C] | 5190 | 5259 | 70 | 25.8 | 22.7 | 28.8 | 22.7 | 5258 | 5323 | 66 | 25.8 | 22.7 | 31.8 | 19.7 | 5255 | 5320 | 66 | 24.2 | 25.8 | 28.8 | 21.2 | 5260 | 5325 | 66 | 24.2 | 22.7 | 30.3 | 22.8 | ||||
tRNA | Tyr [C] | 6817 | 6887 | 71 | 21.4 | 20.0 | 31.4 | 27.2 | 5324 | 5393 | 70 | 20.0 | 22.9 | 31.4 | 25.7 | 5321 | 5392 | 72 | 23.6 | 26.4 | 27.8 | 22.2 | 5326 | 5397 | 72 | 22.2 | 22.2 | 29.2 | 26.4 | ||||
Gene | cox1 | 5262 | 6816 | 1555 | ATG/AAT | 28.6 | 22.4 | 16.5 | 32.5 | 5395 | 6951 | 1557 | GTG/TAA | 27.3 | 25.1 | 17.5 | 30.1 | 5392 | 6948 | 1557 | GTG/TAA | 28.1 | 21.1 | 17.3 | 33.5 | 5397 | 6953 | 1557 | GTG/TAA | 28.5 | 23.3 | 16.1 | 32.1 |
tRNA | Ser (UCN) [C] | 6817 | 6887 | 71 | 26.8 | 16.9 | 28.2 | 28.1 | 6954 | 7024 | 71 | 25.4 | 15.5 | 28.2 | 30.9 | 6950 | 7020 | 71 | 28.2 | 18.3 | 25.4 | 28.1 | 6956 | 7026 | 71 | 28.2 | 25.4 | 16.9 | 29.5 | ||||
tRNA | Asp | 6903 | 6971 | 69 | 31.9 | 21.7 | 23.2 | 23.2 | 7040 | 7108 | 69 | 37.3 | 26.1 | 18.8 | 17.8 | 7031 | 7099 | 69 | 37.7 | 15.9 | 14.5 | 31.9 | 7042 | 7109 | 68 | 38.9 | 22.1 | 19.1 | 19.9 | ||||
Gene | cox2 | 6974 | 7661 | 688 | ATG/T | 32.1 | 24.4 | 14.7 | 28.8 | 7111 | 7798 | 688 | ATG/T | 31.4 | 28.2 | 15.1 | 25.3 | 7102 | 7789 | 688 | ATG/T | 32.3 | 21.9 | 14.8 | 31.0 | 7112 | 7799 | 688 | ATG/T | 32.3 | 25.0 | 14.2 | 28.5 |
tRNA | Lys | 7662 | 7736 | 75 | 32.0 | 24.0 | 20.0 | 24.0 | 7799 | 7872 | 74 | 31.1 | 28.4 | 21.6 | 18.9 | 7790 | 7863 | 74 | 29.7 | 25.7 | 23.0 | 21.6 | 7800 | 7874 | 75 | 29.3 | 22.7 | 12.7 | 35.3 | ||||
Gene | atp8 | 7738 | 7905 | 168 | ATG/TAA | 38.1 | 28.0 | 8.3 | 25.6 | 7874 | 8041 | 168 | ATG/TAA | 37.5 | 29.2 | 9.5 | 23.8 | 7865 | 8032 | 168 | ATG/TAA | 37.5 | 26.2 | 8.3 | 28.0 | 7876 | 8043 | 168 | ATG/TAA | 36.9 | 28.0 | 8.3 | 26.8 |
Gene | atp6 | 7896 | 8576 | 681 | ATG/TAA | 30.2 | 25.4 | 10.4 | 34.0 | 8032 | 8714 | 683 | ATG/TAA | 25.3 | 33.2 | 11.4 | 30.1 | 8023 | 8706 | 684 | ATG/TAA | 28.8 | 24.3 | 11.5 | 35.4 | 8034 | 8717 | 684 | ATG/TAA | 29.1 | 27.0 | 10.5 | 33.4 |
Gene | cox3 | 8576 | 9356 | 781 | ATG/T | 29.8 | 24.2 | 15.7 | 30.3 | 8715 | 9498 | 784 | ATG/T | 26.5 | 30.2 | 16.2 | 27.1 | 8706 | 9489 | 784 | ATG/T | 26.4 | 22.8 | 17.3 | 33.5 | 8717 | 9500 | 784 | ATG/T | 28.6 | 25.8 | 15.8 | 29.8 |
tRNA | Gly | 9357 | 9426 | 70 | 27.1 | 18.6 | 14.3 | 40.0 | 9499 | 9568 | 70 | 38.6 | 21.4 | 14.3 | 25.7 | 9490 | 9559 | 70 | 35.7 | 21.4 | 14.3 | 28.6 | 9501 | 9570 | 70 | 35.7 | 18.6 | 15.7 | 30.0 | ||||
Gene | nad3 | 9427 | 9769 | 343 | ATG/TAA | 26.2 | 26.2 | 13.7 | 33.9 | 9569 | 9911 | 343 | ATG/AAT | 24.8 | 30.6 | 14.3 | 30.3 | 9560 | 9902 | 343 | ATG/T | 24.5 | 22.4 | 16.9 | 36.2 | 9571 | 9913 | 343 | ATG/T | 25.1 | 28.6 | 12.8 | 33.5 |
tRNA | Arg | 9770 | 9838 | 69 | 34.8 | 18.4 | 15.9 | 30.9 | 9912 | 9980 | 69 | 33.3 | 24.6 | 17.4 | 24.7 | 9903 | 9972 | 70 | 35.7 | 21.4 | 15.7 | 27.2 | 9914 | 9983 | 70 | 35.7 | 18.6 | 15.7 | 30.0 | ||||
Gene | nad4L | 9839 | 10135 | 297 | ATG/TAA | 30.3 | 23.9 | 12.8 | 33.0 | 9981 | 10277 | 297 | ATG/TAA | 23.9 | 33.0 | 15.5 | 27.6 | 9972 | 10268 | 297 | ATG/TAA | 26.6 | 24.6 | 13.8 | 35.0 | 9983 | 10279 | 297 | ATG/TAA | 26.6 | 27.3 | 13.1 | 33.0 |
Gene | nad4 | 10129 | 11512 | 1384 | ATG/T | 32.7 | 24.6 | 11.1 | 31.6 | 10271 | 11648 | 1378 | ATG/T | 29.0 | 31.5 | 11.5 | 28.0 | 10262 | 11639 | 1378 | ATG/T | 30.5 | 25.1 | 11.5 | 32.9 | 10273 | 11650 | 1378 | ATG/T | 31.8 | 26.1 | 11.1 | 31.0 |
tRNA | His | 11513 | 11580 | 68 | 35.3 | 17.6 | 16.2 | 30.9 | 11649 | 11717 | 69 | 36.2 | 20.3 | 15.9 | 27.6 | 11640 | 11708 | 69 | 30.4 | 15.9 | 20.3 | 33.4 | 11651 | 11719 | 69 | 34.8 | 17.4 | 17.4 | 30.4 | ||||
tRNA | Ser (AGY) | 11581 | 11645 | 65 | 23.1 | 24.6 | 21.5 | 30.8 | 11718 | 11785 | 68 | 23.5 | 27.9 | 25.0 | 23.6 | 11708 | 11774 | 67 | 22.4 | 23.9 | 23.9 | 29.8 | 11719 | 11785 | 67 | 22.4 | 23.9 | 23.9 | 29.8 | ||||
tRNA | Leu (CUN) | 11646 | 11719 | 74 | 33.8 | 20.3 | 21.6 | 24.3 | 11786 | 11858 | 73 | 32.9 | 21.9 | 20.5 | 24.7 | 11774 | 11847 | 74 | 32.4 | 16.2 | 23.0 | 28.4 | 11785 | 11858 | 74 | 32.4 | 20.3 | 21.6 | 25.7 | ||||
Gene | nad5 | 11720 | 13534 | 1815 | ATG/TAA | 33.2 | 23.3 | 11.5 | 32.0 | 11859 | 13676 | 1818 | ATG/TAA | 30.5 | 30.2 | 12.7 | 26.6 | 11848 | 13665 | 1818 | ATG/TAA | 31.4 | 23.7 | 12.6 | 32.3 | 11859 | 13676 | 1818 | ATG/TAA | 32.3 | 24.4 | 11.7 | 31.6 |
Gene | nad6 [C] | 13530 | 14042 | 513 | ATG/AGA | 19.9 | 9.4 | 28.1 | 42.6 | 13668 | 14186 | 519 | ATG/TAA | 15.2 | 10.4 | 35.1 | 39.3 | 13657 | 14175 | 519 | ATG/TAA | 19.5 | 11.9 | 29.5 | 39.1 | 13668 | 14186 | 519 | ATG/TAA | 19.8 | 9.4 | 28.7 | 42.1 |
tRNA | Glu [C] | 14043 | 14111 | 69 | 24.6 | 14.5 | 26.1 | 34.8 | 14187 | 14255 | 69 | 26.1 | 14.5 | 26.1 | 33.3 | 14176 | 14245 | 70 | 28.6 | 11.4 | 21.4 | 38.6 | 14187 | 14257 | 71 | 23.9 | 14.1 | 25.4 | 36.6 | ||||
Gene | cytb | 14114 | 15253 | 1140 | ATG/TAG | 29.5 | 25.4 | 12.6 | 32.5 | 14258 | 15400 | 1143 | ATG/TAG | 27.4 | 30.4 | 14.4 | 27.8 | 14246 | 15388 | 1143 | ATG/TAG | 27.7 | 23.3 | 14.8 | 34.2 | 14258 | 15400 | 1143 | ATG/TAG | 28.6 | 26.2 | 13.1 | 32.1 |
tRNA | Thr | 15253 | 15322 | 70 | 30.0 | 22.9 | 20.0 | 27.1 | 15400 | 15470 | 71 | 26.8 | 26.8 | 22.5 | 23.9 | 15388 | 15458 | 71 | 26.8 | 25.4 | 21.1 | 26.7 | 15400 | 15471 | 72 | 29.2 | 25.0 | 20.8 | 25.0 | ||||
tRNA | Pro [C] | 15350 | 15418 | 69 | 21.7 | 11.6 | 38.4 | 28.3 | 15500 | 15566 | 67 | 22.4 | 11.9 | 29.9 | 35.8 | 15499 | 15565 | 67 | 20.9 | 11.9 | 31.3 | 35.9 | 15497 | 15563 | 67 | 23.9 | 10.4 | 28.4 | 37.3 | ||||
Cont region | D-loop | 15419 | 17552 | 2134 | 39.3 | 17.9 | 9.4 | 33.4 | 15567 | 17610 | 2044 | 39.0 | 20.2 | 10.7 | 30.1 | 15566 | 17474 | 1909 | 37.2 | 19.0 | 9.8 | 34.0 | 15564 | 17716 | 2153 | 39.3 | 19.0 | 9.1 | 32.6 | ||||