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Table 2 LXR target genes with peaks in proximal region

From: Genome-wide landscape of liver X receptor chromatin binding and gene regulation in human macrophages

Gene expression data Peak within ± 100 kb Peak within
100 kb-1 Mb
Chr Start P-value Gene FC T09 vehicle Heinz et al. T09 vehicle
12 57094565 8.29E-05 NACA 5.63 S L   S S
15 69745123 1.88E-04 RPLP1 5.19 M L   L M
2 47272677 2.28E-04 CALM2 4.20 M M X L M
12 53689235 1.57E-04 PFDN5 3.59 S M   L L
5 177482390 9.93E-04 LOC653314 3.20 M L   S S
22 20103461 1.14E-04 RANBP1 3.17 S M   M M
9 107543283 4.46E-04 ABCA1 2.94 S S X S S
21 43619799 8.29E-05 ABCG1 2.87 S S X L M
11 9681985 3.86E-04 LOC731640 2.79 S    L M
4 154073494 3.16E-04 TRIM2 2.75 M M   M M
11 64084167 6.49E-04 HSPC152 2.71 S M   S S
16 2009519 5.19E-04 NDUFB10 2.70 M L   S S
1 40306708 1.12E-04 TRIT1 2.44 M M   M M
19 41768391 4.25E-04 HNRPUL1 2.37 S   X S M
1 107599301 9.61E-05 PRMT6 2.25 M M    
16 50352941 1.44E-04 BRD7 2.20 M M X   L
9 128024073 5.65E-04 GAPVD1 2.02 M M   M M
6 16129356 1.63E-04 MYLIP 2.00 M   X   
1 156163730 2.09E-04 SLC25A44 1.97 S S   M S
1 228823162 5.41E-04 FTHL2 1.92 S S   S S
5 137841784 7.92E-04 ETF1 1.91 S S   L M
11 9685628 5.87E-04 SWAP70 1.86 S    L M
19 12907634 5.28E-04 PRDX2 1.84 S L X L S
12 57057127 4.78E-04 PTGES3 1.76 S L   S S
3 186507669 5.41E-04 RFC4 1.73 M M X L L
17 7362685 6.20E-04 ZBTB4 1.67 S    L  
1 109852192 7.41E-04 SORT1 0.60 M M   M M
5 177631508 7.92E-04 HNRNPAB 0.59 S S   M M
9 137208944 8.64E-04 RXRA 0.56 M M   S M
3 57557090 9.67E-04 ARF4 0.55 S    L M
11 62623518 1.88E-04 SLC3A2 0.43 S L   S S
  1. Only genes with a T09 peak with FDR < 1% within ± 100 kb from their TSS are displayed (the full list of LXR target genes is available in additional file 5: Table S2). Symbols for peaks are as follows: S = stringent peak with FDR < 1%, FE > 4 and P < 10-10; M = peak with FDR < 1%; L = peak with FDR < 5%; X = any peak.