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Table 1 Sequencing of T. parva parent and progeny strains using the Roche 454 GS FLX sequencer with Titanium chemistry

From: High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing

Strain

Library type

Number of reads

Number of bases

Mean length (nt)

Median length (nt)

Mode length (nt)

Average coverage

Marikebuni

Shotgun

1164490

424965409

365

394

268

59

 

PE (8 Kb) 1

473070

148973321

315

321

336

 

Uganda

Shotgun

740576

304223344

411

440

464

46

 

PE (8 Kb)

272148

90236805

332

340

358

 

MugugaMarikebuni

Shotgun

237978

88212143

371

395

417

16

 

PE (11 Kb)

433252

115642514

267

269

263

 

MugugaUganda

Shotgun

732222

277159312

379

397

410

57

 

PE (3 Kb)

608039

213454970

351

368

389

 
  1. 1Paired-end library (insert size in Kb).