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Table 3 Unmapped and unaligned regions in T. parva Muguga genome by pair-wise comparisons to the four genomes sequenced in this study

From: High-resolution genotyping and mapping of recombination and gene conversion in the protozoan Theileria parva using whole genome sequencing

  Marikebuni Uganda MugugaMarikebuni MugugaUganda
Unmapped bases 1 209716 943493 186820 165122
Unmapped and unaligned bases (% of unmapped bases)2 124013 (59%) 548856 (58%) 66465 (35%) 111753 (67%)
Number of genes with unmapped and unaligned bases 59 37 29 57
  1. 1 Unmapped by 454 reads using gsMapper.
  2. 2 Unmapped by 454 reads using gsMapper, unaligned by de novo assembled contigs using MUMmer.