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Table 4 Distribution of intronic differentially expressed (DE) bins

From: Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells

All intronic bins:
  3 hours 6 hours 12 hours 24 hours 48 hours  
  Down-regulated* Up-regulated* Down-regulated* Up-regulated* Down-regulated* Up-regulated* Down-regulated* Up-regulated* Down-regulated* Up-regulated* Total Up- or Down-Reg. All Time Points
Intronic bins** 6,530 10,274 3,041 5,063 4,062 3,515 5,359 3,995 5,070 2,953  
Introns overlapping intronic bins 4,331 6,995 3,149 5,152 3,779 3,645 4,063 3,856 4,096 3,087 24,181
Transcripts overlapping intronic bins 5,433 8,463 4,709 7,557 5,387 5,555 5,674 5,522 5,814 4,870 20,061
Loci overlapping intronic bins 2,254 3,622 1,972 3,082 2,315 2,340 2,331 2,321 2,416 2,046 8,016
Intronic bins with no corresponding changes in the exons:
Intronic bins** 3,569 4765 2,292 4,033 3,016 2,665 3,413 3,134 4,131 2,449  
Introns overlapping intronic bins 2,813 4,414 2,435 4,131 2,906 2,849 3,014 3,114 3,514 2,613 19,462
Transcripts overlapping intronic bins 3,890 6,165 3,727 6,098 4,253 4,522 4,422 4,626 5,054 4,186 18,209
Loci overlapping intronic bins 1,556 2,472 1,474 2,316 1,754 1,777 1,713 1,820 1,974 1,620 7,319
  1. *Relative to the control time point; **After removal of bins overlapping exons of Ensembl annotations.