From: Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells
All intronic bins: | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
3 hours | 6 hours | 12 hours | 24 hours | 48 hours | |||||||
Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Down-regulated* | Up-regulated* | Total Up- or Down-Reg. All Time Points | |
Intronic bins** | 6,530 | 10,274 | 3,041 | 5,063 | 4,062 | 3,515 | 5,359 | 3,995 | 5,070 | 2,953 | |
Introns overlapping intronic bins | 4,331 | 6,995 | 3,149 | 5,152 | 3,779 | 3,645 | 4,063 | 3,856 | 4,096 | 3,087 | 24,181 |
Transcripts overlapping intronic bins | 5,433 | 8,463 | 4,709 | 7,557 | 5,387 | 5,555 | 5,674 | 5,522 | 5,814 | 4,870 | 20,061 |
Loci overlapping intronic bins | 2,254 | 3,622 | 1,972 | 3,082 | 2,315 | 2,340 | 2,331 | 2,321 | 2,416 | 2,046 | 8,016 |
Intronic bins with no corresponding changes in the exons: | |||||||||||
Intronic bins** | 3,569 | 4765 | 2,292 | 4,033 | 3,016 | 2,665 | 3,413 | 3,134 | 4,131 | 2,449 | |
Introns overlapping intronic bins | 2,813 | 4,414 | 2,435 | 4,131 | 2,906 | 2,849 | 3,014 | 3,114 | 3,514 | 2,613 | 19,462 |
Transcripts overlapping intronic bins | 3,890 | 6,165 | 3,727 | 6,098 | 4,253 | 4,522 | 4,422 | 4,626 | 5,054 | 4,186 | 18,209 |
Loci overlapping intronic bins | 1,556 | 2,472 | 1,474 | 2,316 | 1,754 | 1,777 | 1,713 | 1,820 | 1,974 | 1,620 | 7,319 |