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Table 4 Distribution of intronic differentially expressed (DE) bins

From: Intronic RNAs constitute the major fraction of the non-coding RNA in mammalian cells

All intronic bins:

 

3 hours

6 hours

12 hours

24 hours

48 hours

 
 

Down-regulated*

Up-regulated*

Down-regulated*

Up-regulated*

Down-regulated*

Up-regulated*

Down-regulated*

Up-regulated*

Down-regulated*

Up-regulated*

Total Up- or Down-Reg. All Time Points

Intronic bins**

6,530

10,274

3,041

5,063

4,062

3,515

5,359

3,995

5,070

2,953

 

Introns overlapping intronic bins

4,331

6,995

3,149

5,152

3,779

3,645

4,063

3,856

4,096

3,087

24,181

Transcripts overlapping intronic bins

5,433

8,463

4,709

7,557

5,387

5,555

5,674

5,522

5,814

4,870

20,061

Loci overlapping intronic bins

2,254

3,622

1,972

3,082

2,315

2,340

2,331

2,321

2,416

2,046

8,016

Intronic bins with no corresponding changes in the exons:

Intronic bins**

3,569

4765

2,292

4,033

3,016

2,665

3,413

3,134

4,131

2,449

 

Introns overlapping intronic bins

2,813

4,414

2,435

4,131

2,906

2,849

3,014

3,114

3,514

2,613

19,462

Transcripts overlapping intronic bins

3,890

6,165

3,727

6,098

4,253

4,522

4,422

4,626

5,054

4,186

18,209

Loci overlapping intronic bins

1,556

2,472

1,474

2,316

1,754

1,777

1,713

1,820

1,974

1,620

7,319

  1. *Relative to the control time point; **After removal of bins overlapping exons of Ensembl annotations.