From: A duck RH panel and its potential for assisting NGS genome assembly
 | WGA-PCR | WGA-FLDMqPCR | Pre-ampFLDMqPCR | BLAST to duck assembly | ||||||
---|---|---|---|---|---|---|---|---|---|---|
WGA Duck1 | Duck2 | No. pos3 | WGA Duck1 | Duck2 | No. pos3 | Duck2 | No. pos3 | BLAST hit (scaffold name) | Scaffold length (bp) | |
EstCtg11412 | + | + | 11 | + | + | 3 | + | 25 | sca4924 | 26 914 |
EstCtg23833 | - | + | 0 | - | + | 0 | + | 25 | C19155564 | 548 |
EstCtg2805 | + | + | 18 | - | + | 3 | + | 24 | sca12946 | 245 |
EstCtg293 | + | + | 24 | + | + | 16 | + | 30 | sca271 | 23 394 |
EstCtg727 | + | + | 14 | - | + | 1 | + | 44 | nohit | NA |
EstCtg8099 | - | + | 1 | - | + | 2 | + | 29 | C18154597 | 159 |
Y03G5XE5 | + | + | 7 | - | + | 0 | + | 25 | nohit | NA |
Y04H5QRB | + | + | 13 | + | + | 11 | + | 43 | sca1017 | 95 902 |
Nb. Controls 4 or Mean pos 5 | 6/8 | 8/8 | 11 | 3/8 | 8/8 | 4.5 | 16/16 | 30.6 | NA | NA |
Mean retentions (%) | NA | NA | 12 | NA | NA | 5 | NA | 34 | NA | NA |