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Table 2 Locations and conservation of STAR element in 15  S. aureus genomes

From: Variation in the genomic locations and sequence conservation of STAR elements among staphylococcal species provides insight into DNA repeat evolution

S. aureus genomes

Locus No.

A

B

C

D

E

F

G

H

I

J

K

L

M

N

O

1

  

1

            

2

2

2

1

2

1

1

1

1

1

1

1

2

2

2

1

3

  

1

            

4

  

1

2

1

1

1

1

1

1

     

5

3

3

        

1

1

1

1

1

6

  

1

1

           

7

          

1

1

1

1

1

8

2

2

3

2

           

9

   

1

           

10

2

2

2

1

2

2

2

2

2

2

4

4

4

4

4

11

    

2

2

1

2

2

2

     

12

1

1

4

 

1

1

1

1

1

1

1

1

1

1

1

13

  

1

       

1

1

1

1

1

14

  

1

3

           

15

1

1

1

 

1

1

1

1

1

1

1

1

1

1

1

16

  

2

2*

3

3

2

3

3

3

     

17

   

1

           

18

   

1

           

19

1

1

3

1

2

2

2

2

2

2

2

2

2

2

2

20

3

3

 

2

1

1

1

1

1

1

2

2

4

3

3

21

3

3

5

1

2

2

3

3

3

3

3

3

3

3

3

22

1

1

1

       

1

 

1

1

1

23

   

2

           

24

1

1

 

1

1

1

3

3

3

3

7

6

4

4

7

25

  

1

            

26

   

2

           

27

3

3

2

1

2

2

 

2

2

2

1

1

1

1

1

28

3

3

1

1

4

4

4

4

5

4

     

29

1

1

  

2

2

2

2

2

2

     

30

2

3

1

2

2

2

2

2

2

2

2

2

2

2

2

31

1

2

             

32

3

3

  

3

3

1

1

1

1

2

2

2

2

2

33

  

1

            

34

1

1

  

1

1

1

1

1

1

1

1

1

1

1

35

3

2

  

4

4

4

4

4

4

3

3

3

3

3

36

   

1

           

37

   

2

           

38

2

4

 

2

           

39

1

1

  

1

1

1

1

1

1

1

1

1

1

1

40

  

2

            

41

2

4

 

1

3

3

3

3

3

3

4

2

2

2

4

42

4

4

  

4

4

5

4

4

4

5

5

2

2

5

43

2

2

2

       

2

2

2

2

2

44

2

2

4

3

2

2

2

2

2

2

2

2

2

2

2

45

  

1

            

46

2

2

1

2

2

2

2

1

1

1

3

3

3

3

3

47

  

3

            

48

4

4

2**

2**

4

4

4

4

4

4

4

4

4

4

4

49

2

1

  

3

3

4

6

6

6

3

1

1

3

3

50

3

3

3

4

5

5

3

6

6

6

2

7

5

5

5

51

2

2

1

1

3

3

3

3

3

3

2

3

3

3

3

52

   

1

           

53

  

2

            

54

4

4

 

2

      

4

4

4

4

4

55

3

3

2

2

4

4

4

3

3

4

3

2

2

2

3

56

    

1

1

1

1

1

1

1

1

1

1

1

57

    

2

2

2

2

2

2

     

58

   

1

           

59

   

1

           

60

1

1

        

1

1

1

1

1

61

1

1

             

62

1

1

1

1

3

3

3

3

3

3

4

3

4

4

4

63

  

2

            

64

3

4

1**

1

  

2

2

2

2

1

 

1

1

1

65

4

4

             

66

2

2

  

1

1

3

2

2

2

     

67

    

1

1

1

1

1

1

     

68

   

1

           

69

2

2

        

2

2

2

2

2

70

   

2

           

71

   

2

           

Total loci

39

39

32

36

33

33

33

34

34

34

34

32

34

34

34

  1. The presence and number of STAR motifs at each potential STAR locus identified from each of the following S. aureus genomes: (A) MSSA476, (B) MW2, (C) MRSA252, (D) RF122, (E) JH1, (F) JH9, (G) ED98, (H), Mu3, (I)Mu50, (J) N315, (K) COL, (L) NCTC8325, (M) USA300 FRP3757, (N) USA300 TCH1516, (O) Newman. * indicates only the upstream gene matches. ** indicates only the downstream gene matches. Annotations for unknown genes are taken from MSSA476, MRSA 252 and RF122. Full details of adjacent loci are available in Table S3 (Additional file 1).
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BMC Genomics

ISSN: 1471-2164

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