Table 2 Cucumber fruit contigs very highly expressed in only one age group (>0.1% representation) at 0–4, 8, or 12–16 dpp
Contig # | Length (bp) | Reads | Hit ID Arabidopsis | Hit Description | E value | |
|---|---|---|---|---|---|---|
| Â | Â | Total | 0+4 | Â | Â | Â |
3017 | 2294 | 1346 | 1269 | AT1G08450 | CRT3 (CALRETICULIN 3); calcium ion binding/unfolded protein binding | 0.0 |
2794 | 1211 | 1482 | 1100 | AT4G35100 | PIP3 (PLASMA MEMBRANE INTRINSIC PROTEIN 3); water channel | 1.0E-139 |
1157 | 739 | 1256 | 792 | AT1G26880 | 60S ribosomal protein L34 (RPL34A) | 2.0E-59 |
2093 | 1884 | 1133 | 721 | AT5G62700 | TUB3; GTP binding/GTPase/structural molecule | 0.0 |
2075 | 637 | 1185 | 657 | AT2G21580 | 40S ribosomal protein S25 (RPS25B) | 3.0E-51 |
886 | 1337 | 1195 | 633 | AT3G55440 | TPI (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase | 1.0E-119 |
2327 | 1622 | 858 | 615 | AT4G27440 | PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B | 0.0 |
3154 | 1085 | 1136 | 611 | AT1G67430 | 60S ribosomal protein L17 (RPL17B) | 1.0E-86 |
885 | 1370 | 951 | 605 | AT2G30620 | histone H1.2 | 1.0E-66 |
2351 | 608 | 1093 | 579 | AT3G61110 | ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27) | 7.0E-46 |
2804 | 1198 | 1072 | 575 | AT3G04840 | 40S ribosomal protein S3A (RPS3aA) | 1.0E-126 |
2255 | 888 | 1075 | 566 | AT4G40030 | histone H3.2 | 4.0E-72 |
192 | 1383 | 701 | 522 | AT1G18250 | ATLP-1; thaumatin-like protein | 1.0E-115 |
2894 | 744 | 641 | 518 | AT5G59970 | histone H4 | 2.0E-53 |
2685 | 1054 | 788 | 497 | AT5G39850 | 40S ribosomal protein S9 (RPS9C) | 1.0E-102 |
606 | 1477 | 756 | 492 | No hits found | Â | Â |
1038 | 1121 | 948 | 484 | AT3G53740 | 60S ribosomal protein L36 (RPL36B) | 8.0E-45 |
820 | 702 | 783 | 481 | AT5G50460 | protein transport protein SEC61 gamma subunit, putative | 9.0E-32 |
107 | 714 | 670 | 474 | AT5G59970 | histone H4 | 1.0E-53 |
1260 | 801 | 867 | 463 | AT5G56710 | 60S ribosomal protein L31 (RPL31C) | 3.0E-54 |
5501 | 1223 | 912 | 459 | AT3G52590 | UBQ1 (UBIQUITIN EXTENSION PROTEIN 1) | 1.0E-68 |
| Â | Â | Total | 8 | Â | Â | Â |
3064 | 960 | 1162 | 776 | AT5G22430 | unknown protein | 1.0E-25 |
3334 | 1146 | 832 | 505 | AT3G46040 | RPS15AD (ribosomal protein S15A D) | 2.0E-27 |
1282 | 680 | 980 | 490 | No hits found | Â | Â |
1650 | 1644 | 514 | 404 | AT5G33370 | GDSL-motif lipase/hydrolase family protein | 1.0E-146 |
3111 | 1010 | 886 | 349 | No hits found | phloem filament protein; PP1; phloem protein 1 [Cucurbita maxima] | 1.0E-25 |
424 | 912 | 1035 | 331 | AT5G59880 | ADF3 (ACTIN DEPOLYMERIZING FACTOR 3); actin binding | 5.0E-63 |
153 | 715 | 766 | 317 | No hits found | Â | Â |
12937 | 953 | 418 | 312 | AT4G15630 | integral membrane family protein | 3.0E-37 |
11169 | 949 | 792 | 284 | AT1G28330 | DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1) | 3.0E-41 |
2993 | 1046 | 494 | 270 | No hits found | Â | Â |
2805 | 767 | 757 | 267 | No hits found | Â | Â |
13496 | 951 | 687 | 267 | No hits found | Â | Â |
2700 | 654 | 428 | 263 | AT5G38650 | proteasome maturation factor UMP1 family protein | 2.0E-61 |
2357 | 598 | 526 | 261 | No hits found | Â | Â |
1468 | 899 | 821 | 244 | AT1G51200 | zinc finger (AN1-like) family protein | 8.0E-53 |
2350 | 973 | 551 | 242 | AT1G11530 | ATCXXS1; protein disulfide isomerase | 2.0E-37 |
3297 | 1632 | 729 | 242 | AT3G26960 | unknown protein | 8.0E-35 |
3067 | 1145 | 744 | 240 | AT2G10940 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein | 5.0E-61 |
342 | 928 | 717 | 225 | AT3G26960 | unknown protein | 2.0E-43 |
456 | 830 | 645 | 223 | No hits found | Â | Â |
485 | 1612 | 919 | 220 | AT1G09690 | 60S ribosomal protein L21 (RPL21C) | 1.0E-81 |
924 | 1025 | 673 | 214 | AT4G37300 | MEE59 (maternal effect embryo arrest 59) | 5.0E-24 |
1445 | 1372 | 514 | 203 | AT5G65020 | ANNAT2 (Annexin Arabidopsis 2); calcium ion binding | 1.0E-131 |
620 | 1165 | 472 | 199 | AT3G10210 | unknown function | 1.0E-94 |
2771 | 1339 | 491 | 195 | No hits found | Â | Â |
489 | 829 | 799 | 192 | AT1G79040 | PSBR (photosystem II subunit R) | 4.0E-56 |
3147 | 950 | 593 | 192 | AT4G14305 | unknown function | 1.0E-62 |
| Â | Â | Total | 12+16 | Â | Â | Â |
1561 | 899 | 1684 | 1221 | No hits found | Â | Â |
504 | 1593 | 1167 | 855 | AT5G47120 | ATBI1 (BAX INHIBITOR 1) | 1.0E-109 |
2496 | 1641 | 1319 | 810 | AT2G02760 | ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2) | 9.0E-86 |
2811 | 1259 | 1273 | 694 | AT1G07890 | APX1 (ascorbate peroxidase 1); L-ascorbate peroxidase | 1.0E-119 |
493 | 3235 | 1307 | 679 | No hits found | hypothetical protein [Vitis vinifera] | 8.0E-37 |
1702 | 874 | 685 | 607 | AT5G59720 | HSP18.2 (heat shock protein 18.2) | 2.0E-69 |
2864 | 1409 | 870 | 578 | AT2G43750 | OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase | 1.0E-142 |
1551 | 2577 | 765 | 558 | AT5G19150 | carbohydrate kinase family | 1.0E-135 |
54 | 1237 | 1084 | 538 | AT2G23090 | unknown protein | 4.0E-35 |
410 | 1047 | 1055 | 518 | AT1G13950 | ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1) | 6.0E-79 |
296 | 1842 | 750 | 516 | AT3G44110 | ATJ3; heat shock protein DNAJ homolog, protein binding | 0.0 |
281 | 1330 | 1094 | 532 | AT5G20720 | CPN20 (CHAPERONIN 20); calmodulin binding | 6.0E-98 |
2649 | 1071 | 1017 | 502 | AT2G21660 | CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) | 7.0E-44 |
2541 | 2197 | 740 | 483 | AT3G48000 | ALDH2B4; 3-chloroallyl aldehyde dehydrogenase | 0.0 |
698 | 1330 | 950 | 477 | AT5G22080 | DNAJ heat shock N-terminal domain-containing protein | 1.0E-112 |
1568 | 1292 | 515 | 470 | AT5G12020 | HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) | 7.0E-49 |
1606 | 1153 | 687 | 455 | AT2G43750 | OASB (O-ACETYLSERINE (THIOL) LYASE B); cysteine synthase | 1.0E-121 |
2828 | 1099 | 640 | 435 | AT1G51200 | zinc finger (AN1-like) family protein | 4.0E-51 |
2414 | 869 | 613 | 432 | AT3G16640 | TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) | 2.0E-70 |
2054 | 595 | 551 | 427 | No hits found | Â | Â |
2219 | 882 | 546 | 411 | No hits found | 26 kDa phloem lectin [Cucumis sativus] | 4.0E-83 |