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Table 1 Experimental matings for SNP genotyping

From: Meiotic maps of sockeye salmon derived from massively parallel DNA sequencing

Family

Number of individuals

Genotyping method

Segregating EST loci in each family

HX1

45

5’-nuclease

44

HX2

45

5’-nuclease

47

HX3

45

5’-nuclease

52

HX5

45

5’-nuclease

53

HX6

93

5’-nuclease

57

HX7

45

5’-nuclease

48

HX8

45

5’-nuclease

52

HX9

45

5’-nuclease

54

HX10

45

5’-nuclease

50

HX11

45

5’-nuclease

52

HX12

45

5’-nuclease

56

HX13*

45

5’-nuclease

53

HX13-WL*

96

RAD sequencing, 5’-nuclease

53

HX14

45

5’-nuclease

49

HX-Parents†

6

RAD sequencing, 5’-nuclease

100

  1. Number of progeny included from each family, the genotyping method used on each, and the number of segregating EST loci.
  2. * HX13 and HX13-WL were two different sets of offspring from the same parents. †Parents were the male and female from families HX6, HX8, and HX13. The additional parents were used for the assembly of paired end contigs.