LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types

BMC Genomics

Table 1 Description of datasets used in the study GEO identifiers indicate the GSE ID for the study

Source	GEO	GEO	GEO	GEO	TCGA	TCGA	TCGA	TCGA	TCGA	TCGA
Source	17648	21304	22867	26126	TCGA	TCGA	TCGA	TCGA	TCGA	TCGA
Tumor Type	Colon	Multiple Myeloma	Glioblastoma	Prostate	Breast	Kidney	Lung AC	Lung SCC	Ovarian	Stomach
Normal Sample #	22	3	4	71	27	199	24	27	8	57
Cancer Sample #	22	161	77	71	67	199	24	27	39	57
P-value < 0.01	7922	4489	1403	9151	6672	10664	6419	6738	4376	8436
P-value < 0.01 and at least 10% change in average methylation	5642	4343	1179	3263	3888	2022	3847	3641	1900	3000
Matched	Yes	No	No	Yes	No	Yes	Yes	Yes	No	Yes

ISSN: 1471-2164