Table 2 Biological concepts represented in the LRpath database
From: LRpath analysis reveals common pathways dysregulated via DNA methylation across cancer types
Biological knowledge type | Concept type | Number of concepts |
|---|---|---|
Functional Annotations | Biocarta pathways | 103 |
| Â | EHMN Metabolic pathways | 59 |
| Â | GO Biological Process | 4566 |
| Â | Go Cellular Component | 634 |
| Â | Go Molecular Function | 1264 |
| Â | KEGG Pathway | 222 |
| Â | Panther Pathway | 98 |
| Â | PFAM | 767 |
Literature Derived | MeSH | 6001 |
| Â | OMIM | 142 |
Targets | Drug Bank | 293 |
| Â | miRBase | 149 |
| Â | Transcription Factors | 241 |
Interaction | Protein Interaction (MiMI) | 8999 |
Other | Metabolite | 959 |
| Â | Cytoband | 1151 |