Table 1 Estimated coefficients of ribosome occupancy and ribosome density models
Parameter | Variable to explain: Ribosome occupancy | Variable to explain: Ribosome density |
|---|---|---|
mRNA concentration | 0.12 (p = 1.2 x 10-4) | −0.15 (p = 4.0 x 10-6) |
mRNA half-life | −0.38 (p < 2.0 x 10-16) | −0.36 (p < 2.0 x 10-16) |
CDS length | 0.24 (p = 2.3 x 10-14) | −0.22 (p = 1.4 x 10-10) |
Aromaticity | / | 0.09 (p = 8.7 x 10-3) |
CAI | 0.16 (p = 6.3 x 10-6) | −0.11 (p = 7.6 x 10-3) |
ΔGdown | 0.12 (p = 4.0 x 10-5) | 0.12 (p = 3.0 x 10-4) |
ΔGup | 0.15 (p = 4.0 x 10-7) | 0.15 (p = 5.7 x 10-6) |
Functional category AMI | / | −0.20 (p = 5.0 x 10-3) |
Functional category COF | / | −0.35 (p = 4.4 x 10-2) |
Functional category INT | 0.68 (p = 1.6 x 10-3) | / |
Functional category REG | 0.62 (p = 1.7 x 10-5) | 0.45 (p = 3.9 x 10-3) |
Functional category TRS | −0.23 (p = 4.0 x 10-2) | / |
Adjusted R2 | 0.34 | 0.22 |