Table 2 Consensus between the top 20 AIPL effects and the top 20 significant effects of the four methods of SNP testing, LS, EMMAX-IBS, GLS, and PCA

9.1540 – 10.3909

-

1-16

2-1, 1–2,

-

BTA14: A5D786-CYHR1-

4-4, 7–5,

VPS28-DGAT1,

3,6~8 ²

A5D786-GML ²

0.3717 – 3.1325

-

1-1

1-1

1-1

BTA14: DGAT1

0.2409 – 0.6798

5-1

5-5

3-4,6

-

BTA18: LOC100139758

53.95 Mb

BTA14: DGAT1

BTA14: A5D786,VPS28

0.0022 – 0.0191

1-1, 11-9

1-1

1-1

1-1

BTA14: DGAT1

BTA5: 93.2 Mb

9.00E-04 – 0.0047

-

1-1

1-1

1-1

BTA6: HERC3-PIGY

0.0240 – 0.1608

2-16,2

1-2

-

1-1

BTA18: SIGLEC12

53.95 Mb and LOC787057

0.0026 – 0.0139

1-10

-

1-16

-

BTA6: GC-NPFFR2

0.0175 – 0.0517

3-6

-

-

-

BTA18: SIGLEC12, LOC787057

0.0231 – 0.0139

1-1,4

1-4

-

3-4

BTA18:SIGLEC12,

53.95 Mb and LOC787057

0.0096 – 0.0554

-

-

-

3-17

BTA18: SIGLEC12

0.0173 – 0.1061

1-1,2

-

-

-

BTA18: SIGLEC12,

53.95 Mb and LOC787057

2.2525 – 16.2685

2-1,4

-

-

-

BTA18: SIGLEC12,

53.95 Mb and LOC787057

0.0160 – 0.0453

3-19,

-

3-14,

-

BTAX: MIR584-8~KAL1,

12-12

7,12-9,10

BTA11: LOC529399

BTA11: LOC521556

BTAX: 145.06 Mb

0.0087 – 0.0458

-

3-1

-

5-2

BTA18: SIGLEC12

0.0144 – 0.0394

1-4

5-1

-

-

BTAX: 145.24 Mb,

BTA18: SIGLEC12

0.0140 – 0.0544

-

1-1

-

-

BTAX: MIR584-8~KAL1

0.0146 – 0.0465

2-16

-

-

-

BTAX: MIR584-8~KAL1

0.0146 – 0.0767

1-6

-

-

-

BTAX: MIR584-8~KAL1

0.0126 – 0.0482

-

17-7

-

17-2

BTA7: SNCAIP-ZNF474

0.0100 – 0.0673

1-7

-

-

-

BTAX: MIR584-8~KAL1