Table 2 Composition of reference and test sets for evaluating imputation accuracy up to 50K
From: Strategies and utility of imputed SNP genotypes for genomic analysis in dairy cattle
Reference-test-ID | Data | Reference set | Test set | Total (animals) | ||||
|---|---|---|---|---|---|---|---|---|
n | % | Description | n | % | Description | |||
1 | 50K | 1363 | 50 | bulls | 1364 | 50 | bulls+cows | 2727 |
2 | 50K | 681 | 25 | bulls | 2046 | 75 | bulls+cows | 2727 |
3 | 50K | 272 | 10 | bulls | 2455 | 90 | bulls+cows | 2727 |
4 | 50K | 136 | 5 | bulls | 2591 | 95 | bulls+cows | 2727 |
5 | 50K | 27 | 1 | key bulls | 2700 | 99 | bulls+cows | 2727 |
6 | 50K | 2205 | 81 | all bulls | 522 | 19 | all cows | 2727 |
7 | 50K | 522 | 19 | all cows | 2205 | 81 | all bulls | 2727 |
8 | 50K | 1753 | 80 | training set bulls | 452 | 20 | test set young bulls | 2205 |