Skip to main content

Table 2 Comparison of tandem repeat MYB genes in rice and Arabidopsis based on cellular localization

From: Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

 

Tandem repeat in rice

    

Blast 2 sequences alignment

TR_NO

TR_OsMYB_G1

TR_OsMYB_G2

OsMYB_G1

OsMYB_G2

Cellular localization G1

Cellular localization G2

Bit score

%identity

E-value

OsTR1

LOC_Os06g07640

LOC_Os06g07650

OsMYB

OsMYB

Nuclear

Nuclear

75.5

55%

2.00E-18

 

LOC_Os06g07650

LOC_Os06g07660

OsMYB

OsMYB

Nuclear

Nuclear

488

84%

2.00E-142

OsTR2

LOC_Os06g14700

LOC_Os06g14710

OsMYB

OsMYB

Nuclear

Nuclear

146

64%

2.00E-40

OsTR3

LOC_Os08g05510

LOC_Os08g05520

OsMYB

OsMYB103

Nuclear

Nuclear

19.2

25%

1.60E-01

OsTR4

LOC_Os09g12750

LOC_Os09g12770

OsMYB

OsMYB

Nuclear

Nuclear

55.8

40%

6.00E-13

OsTR5

LOC_Os12g07610

LOC_Os12g07640

OsMYB

OsMYB

Nuclear

Nuclear

105

45%

2.00E-27

 

Tandem repeat in Arabidopsis

    

Blast 2 sequences alignment

TR _NO

TR _AtMYB _G1

TR _AtMYB _G2

AtMYB _G1

AtMYB _G2

Cellular localization G 1

Cellular localization G2

Bit score

% identity

E-value

AtTR1

AT1G35515

AT1G35516

AtMYB8

AtMYB

Nuclear

Nuclear

No significant similarity found

AtTR2

AT1G66370

AT1G66380

AtMYB113

AtMYB114

Nuclear

Nuclear

212

80%

3.00E-60

 

AT1G66380

AT1G66390

AtMYB114

AtMYB90

Nuclear

Nuclear

220

87%

1.00E-62

AtTR3

AT1G69560

AT1G69580

AtMYB105

AtMYB

Nuclear

Nuclear

14.2

31%

5.3

AtTR4

AT2G26950

AT2G26960

AtMYB104

AtMYB81

Nuclear

Nuclear

358

50%

2.00E-103

AtTR5

AT3G10580

AT3G10585

AtMYB

AtMYB

Nuclear

Nuclear

172

64%

4.00E-48

 

AT3G10590

AT3G10595

AtMYB

AtMYB

Nuclear

Nuclear

56.6

27%

3.00E-13

AtTR6

AT3G12720

AT3G12730

AtMYB67

AtMYB

Nuclear

Nuclear

16.9

31%

4.40E-01

AtTR7

AT4G09450

AT4G09460

AtMYB

AtMYB6

Cytoplasmic

Nuclear

21.2

25%

1.40E-02

AtTR8

AT5G40330

AT5G40350

AtMYB23

AtMYB24

Nuclear

Nuclear

142

55%

5.00E-39

 

AT5G40350

AT5G40360

AtMYB24

AtMYB115

Nuclear

Nuclear

89.4

42%

8.00E-23

  1. MYB coding sequence were aligned using BLAST 2 SEQUENCES to quantitate the sequence differences between the paired genes.