Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

Katiyar, Amit; Smita, Shuchi; Lenka, Sangram Keshari; Rajwanshi, Ravi; Chinnusamy, Viswanathan; Bansal, Kailash Chander

doi:10.1186/1471-2164-13-544

BMC Genomics

Table 3 Comparison of homologous pair of MYB genes of rice and Arabidopsis based on cellular localization

From: Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis

	Duplications in rice						Blast 2 sequences alignment
HP_NO	OsMYB_HP_G1	OsMYB_HP_G2	OsMYB_G1	OsMYB_G2	Cellular localization G 1	Cellular localization G2	Bit score	%identity	E-value
OsHP1	LOC_Os01g06320	LOC_Os05g07010	OsMYB	OsMYB	Nuclear	Nuclear	160	81%	1.00E-38
OsHP2	LOC_Os01g18240	LOC_Os05g04820	OsMYB	OsMYB	Nuclear	Nuclear	1230	79%	0.00E+00
OsHP3	LOC_Os01g44370	LOC_Os05g50350	OsMYB	OsMYB	Nuclear	Nuclear	234	82%	8.00E-59
OsHP4	LOC_Os01g47370	LOC_Os05g49240	OsMYB	OsMYB	Nuclear	Nuclear	188	77%	3.00E-47
OsHP5	LOC_Os01g49160	LOC_Os05g48010	OsMYB	OsMYB	Nuclear	Nuclear	234	94%	2.00E-58
OsHP6	LOC_Os01g50720	LOC_Os05g46610	OsMYB	OsMYB	Nuclear	Nuclear	696	77%	0.00E+00
OsHP7	LOC_Os01g59660	LOC_Os05g41166	GAMYB	OsMYB	Nuclear	Nuclear	298	78%	1.00E-75
OsHP8	LOC_Os01g62410	LOC_Os05g38460	OsMYB3R-2	OsMYB	Nuclear	Nuclear	476	74%	8.00E-124
OsHP9	LOC_Os01g63460	LOC_Os05g37730	OsMYB	OsMYB	Nuclear	Nuclear	22	100%	6.80E-01
OsHP10	LOC_Os01g65370	LOC_Os05g35500	OsMYB3	OsMYB	Nuclear	Nuclear	636	88%	6.00E-168
OsHP11	LOC_Os02g09480	LOC_Os05g37730	OsMYB	OsMYB	Nuclear	Nuclear	32	87%	7.00E-04
OsHP12	LOC_Os02g14490	LOC_Os06g35140	OsMYB	OsMYB	Nuclear	Nuclear	548	73%	2.00E-143
OsHP13	LOC_Os02g40530	LOC_Os04g42950	OsMYB	OsMYB	Nuclear	Nuclear	284	94%	8.00E-72
OsHP14	LOC_Os02g41510	LOC_Os04g43680	OsMYB	OsMYB4	Nuclear	Nuclear	460	86%	3.00E-120
OsHP15	LOC_Os02g42870	LOC_Os04g45060	OsMYB	OsMYB	Nuclear	Nuclear	744	77%	0.00E+00
OsHP16	LOC_Os02g45080	LOC_Os04g47890	OsMYB	OsMYB	Nuclear	Nuclear	312	73%	6.00E-80
OsHP17	LOC_Os02g46780	LOC_Os04g50770	OsMYB	OsMYB	Nuclear	Nuclear	620	70%	2.00E-163
OsHP18	LOC_Os02g51799	LOC_Os06g11780	OsMYB	OsMYB93	Nuclear	Nuclear	442	80%	5.00E-115
OsHP19	LOC_Os02g54520	LOC_Os07g48870	OsMYB	OsMYB2	Nuclear	Nuclear	54	78%	1.00E-09
OsHP20	LOC_Os03g03760	LOC_Os10g39550	OsMYB	OsMYB	Nuclear	Nuclear	136	83%	3.00E-31
OsHP21	LOC_Os03g20090	LOC_Os07g48870	OsMYB112	OsMYB2	Nuclear	Nuclear	554	84%	2.00E-145
OsHP22	LOC_Os03g25550	LOC_Os07g44090	OsMYB	OsMYB	Nuclear	Nuclear	374	88%	1.00E-96
OsHP23	LOC_Os03g26130	LOC_Os07g43580	OsMYB	OsMYB30	Nuclear	Nuclear	384	82%	2.00E-99
OsHP24	LOC_Os05g04820	LOC_Os07g44090	OsMYB	OsMYB	Nuclear	Nuclear	422	83%	2.00E-109
OsHP25	LOC_Os05g10690	LOC_Os01g09640	OsMYB	OsMYB	Nuclear	Nuclear	232	83%	9.00E-58
OsHP26	LOC_Os05g49240	LOC_Os05g50340	OsMYB	OsMYB	Nuclear	Nuclear	104	72%	4.00E-24
OsHP27	LOC_Os06g43090	LOC_Os02g09480	OsMYB	OsMYB	Nuclear	Nuclear	616	71%	2.00E-162
OsHP28	LOC_Os06g45410	LOC_Os02g07770	OsMYB	OsMYB	Nuclear	Nuclear	180	90%	1.00E-43
OsHP29	LOC_Os06g45890	LOC_Os02g07170	OsMYB	OsMYB	Nuclear	Nuclear	98	81%	1.00E-21
OsHP30	LOC_Os07g02800	LOC_Os03g55590	OsMYB	OsMYB	Nuclear	Nuclear	162	91%	1.00E-38
OsHP31	LOC_Os08g25799	LOC_Os09g12750	OsMYB	OsMYB	Nuclear	Nuclear	682	80%	2.00E-180
OsHP32	LOC_Os08g25820	LOC_Os09g12770	OsMYB	OsMYB	Nuclear	Nuclear	616	73%	2.00E-162
OsHP33	LOC_Os08g33660	LOC_Os02g36890	OsMYB16	OsMYB	Nuclear	Nuclear	134	69%	4.00E-31
OsHP34	LOC_Os08g33660	LOC_Os04g38740	OsMYB16	OsMYB	Nuclear	Nuclear	136	80%	1.00E-31
OsHP35	LOC_Os08g33940	LOC_Os09g24800	OsMYB	OsMYB	Nuclear	Nuclear	838	76%	0.00E+00
OsHP36	LOC_Os08g43450	LOC_Os09g36250	OsMYB	OsMYB	Nuclear	Nuclear	76	71%	2.00E-15
OsHP37	LOC_Os08g43550	LOC_Os09g36730	OsMYB7	OsMYB	Nuclear	Nuclear	502	84%	1.00E-131
OsHP38	LOC_Os09g23200	LOC_Os08g33050	OsMYB	OsMYB	Nuclear	Nuclear	222	66%	2.00E-54
OsHP39	LOC_Os10g33810	LOC_Os02g41510	OsMYB15	OsMYB	Nuclear	Nuclear	374	81%	8.00E-97
OsHP40	LOC_Os10g33810	LOC_Os04g43680	OsMYB15	OsMYB4	Nuclear	Nuclear	384	82%	2.00E-99
OsHP41	LOC_Os10g39550	LOC_Os03g03760	OsMYB	OsMYB	Nuclear	Nuclear	384	81%	3.00E-99
OsHP42	LOC_Os11g03440	LOC_Os12g03150	OsMYB	OsMYB	Nuclear	Nuclear	1702	96%	0.00E+00
OsHP43	LOC_Os11g47460	LOC_Os12g37970	OsMYB	OsMYB	Nuclear	Nuclear	634	83%	2.00E-167
OsHP44	LOC_Os12g37690	LOC_Os11g45740	OsMYB78	OsMYB	Nuclear	Nuclear	226	88%	5.00E-56
	Duplications in *Arabidopsis*						Blast 2 sequences alignment
HP _NO	AtMYB _HP _G1	AtMYB _HP _G2	AtMYB _G1	ATMYB _G2	Cellular localization G 1	Cellular localization G2	Bit score	% identity	E-value
AtHP1	AT2G31180	AT1G06180	AtMYB14	AtMYB13	Nuclear	Nuclear	350	84%	2.00E-100
AtHP2	AT1G57560	AT1G09540	AtMYB50	AtMYB61	Nuclear	Nuclear	392	88%	7.00E-113
AtHP3	AT1G58220	AT1G09710	AtMYB1l	AtMYB	Nuclear	Nuclear	827	75%	0
AtHP4	AT1G26580	AT1G13880	AtMYB	No MYB	Nuclear	Nuclear	45.4	76%	4.00E-08
AtHP5	AT2G02820	AT1G14350	AtMYB88	AtMYB124	Nuclear	Nuclear	728	80%	0
AtHP6	AT3G12820	AT1G16490	AtMYB10	AtMYB58	Nuclear	Nuclear	293	79%	3.00E-83
AtHP7	AT1G17950	AT1G73410	AtMYB52	AtMYB54	Nuclear	Nuclear	381	88%	7.00E-110
AtHP8	AT1G79180	AT1G16490	AtMYB63	AtMYB58	Nuclear	Nuclear	346	84%	4.00E-99
AtHP9	AT5G61420	AT1G18570	AtMYB28	AtMYB51	Nuclear	Nuclear	99	86%	1.00E-24
AtHP10	AT1G74080	AT1G18570	AtMYB122	AtMYB51	Nuclear	Nuclear	305	81%	9.00E-87
AtHP11	AT5G07700	AT1G18570	AtMYB76	AtMYB51	Nuclear	Nuclear	185	71%	2.00E-50
AtHP12	AT5G60890	AT1G18570	AtMYB34	AtMYB51	Nuclear	Nuclear	206	77%	8.00E-57
AtHP13	AT1G74430	AT1G18710	AtMYB95	AtMYB47	Nuclear	Nuclear	351	82%	7.00E-101
AtHP14	AT1G74840	AT1G19000	AtMYB	AtMYB	Nuclear	Nuclear	233	85%	3.00E-65
AtHP15	AT1G35516	AT1G22640	AtMYB	AtMYB3	Nuclear	Nuclear	No significant similarity found
AtHP16	AT4G09460	AT1G22640	AtMYB6	AtMYB3	Nuclear	Nuclear	394	84%	1.00E-113
AtHP17	AT1G68320	AT1G25340	AtMYB62	AtMYB116	Nuclear	Nuclear	366	86%	3.00E-105
AtHP18	AT3G27810	AT1G25340	AtMYB21	AtMYB116	Nuclear	Nuclear	149	70%	7.00E-40
AtHP19	AT1G68670	AT1G25550	AtMYB	AtMYB	Nuclear	Nuclear	176	84%	8.00E-48
AtHP20	AT3G29020	AT1G26780	AtMYB110	AtMYB117	Nuclear	Nuclear	232	77%	8.00E-65
AtHP21	AT1G26780	AT1G69560	AtMYB117	AtMYB105	Nuclear	Nuclear	416	88%	3.00E-120
AtHP22	AT5G39700	AT1G69560	AtMYB89	AtMYB105	Nuclear	Nuclear	No significant similarity found
AtHP23	AT5G07690	AT1G74080	AtMYB29	AtMYB122	Nuclear	Nuclear	161	76%	2.00E-43
AtHP24	AT1G19510	AT1G75250	AtMYB	AtMYB	Nuclear	Nuclear	154	80%	4.00E-42
AtHP25	AT4G36570	AT1G75250	AtMYB	AtMYB	Nuclear	Nuclear	No significant similarity found
AtHP26	AT4G34990	AT2G16720	AtMYB32	AtMYB7	Nuclear	Nuclear	411	85%	1.00E-118
AtHP27	AT4G37260	AT2G23290	AtMYB73	AtMYB70	Nuclear	Nuclear	364	84%	1.00E-104
AtHP28	AT5G67300	AT2G23290	AtMYB44	AtMYB70	Nuclear	Nuclear	171	77%	3.00E-46
AtHP29	AT5G11050	AT2G25230	AtMYB64	AtMYB100	Nuclear	Nuclear	63.9	78%	1.00E-13
AtHP30	AT5G01200	AT2G38090	AtMYB	AtMYB	Nuclear	Nuclear	195	82%	1.00E-53
AtHP31	AT3G55730	AT2G39880	AtMYB109	AtMYB25	Nuclear	Nuclear	281	81%	2.00E-79
AtHP32	AT3G10760	AT2G40970	AtMYB	AtMYB	Nuclear	Nuclear	235	69%	8.00E-66
AtHP33	AT5G05090	AT2G40970	AtMYB	AtMYB	Nuclear	Nuclear	156	81%	5.00E-42
AtHP34	AT3G62610	AT2G47460	AtMYB11	AtMYB12	Nuclear	Nuclear	388	86%	9.00E-112
AtHP35	AT5G15310	AT3G01140	AtMYB16	AtMYB106	Nuclear	Nuclear	593	83%	2.00E-173
AtHP36	AT5G40350	AT3G01530	AtMYB24	AtMYB57	Nuclear	Nuclear	254	81%	1.00E-71
AtHP37	AT5G16600	AT3G02940	AtMYB43	AtMYB107	Nuclear	Nuclear	110	73%	7.00E-28
AtHP38	AT5G16770	AT3G02940	AtMYB9	AtMYB107	Nuclear	Nuclear	586	86%	3.00E-171
AtHP39	AT3G24120	AT3G04030	AtMYB3l	AtMYB	Nuclear	Nuclear	73%	86	1.00E-20
AtHP40	AT5G18240	AT3G04030	AtMYB	AtMYB	Nuclear	Nuclear	887	80%	0
AtHP41	AT5G49620	AT3G06490	AtMYB78	AtMYB108	Nuclear	Nuclear	396	83%	4.00E-114
AtHP42	AT5G02320	AT3G09370	AtMYB3R5	AtMYB3R3	Nuclear	Nuclear	610	85%	4.00E-178
AtHP43	AT5G04760	AT3G10580	AtMYB	AtMYB	Nuclear	Nuclear	105	71%	7.00E-27
AtHP44	AT5G05790	AT3G11280	AtMYB	AtMYB	Nuclear	Nuclear	455	80%	5.00E-132
AtHP45	AT5G06100	AT3G11440	AtMYB33	AtMYB65	Nuclear	Nuclear	710	78%	0
AtHP46	AT1G56160	AT3G12820	AtMYB72	AtMYB10	Nuclear	Nuclear	270	81%	2.00E-76
AtHP47	AT4G13480	AT3G24310	AtMYB79	AtMYB71	Nuclear	Nuclear	436	83%	2.00E-126
AtHP48	AT1G13300	AT3G25790	AtMYB	AtMYB	Nuclear	Nuclear	250	84%	4.00E-70
AtHP49	AT5G40360	AT3G27785	AtMYB115	AtMYB118	Nuclear	Nuclear	161	76%	3.00E-43
AtHP50	AT3G01530	At1g68320	AtMYB57	AtMYB62	Nuclear	Nuclear	239	81%	4.00E-67
AtHP51	AT5G14750	AT3G27920	AtMYB66	AtMYB0	Nuclear	Nuclear	320	80%	1.00E-91
AtHP52	AT5G40330	AT3G27920	AtMYB23	AtMYB0	Nuclear	Nuclear	379	85%	2.00E-109
AtHP53	AT5G59780	AT3G46130	AtMYB59	AtMYB48	Nuclear	Nuclear	237	86%	1.00E-66
AtHP54	AT5G59570	AT3G46640	AtMYB	AtMYB	Nuclear	Nuclear	313	85%	4.00E-89
AtHP55	AT5G62470	AT3G47600	AtMYB96	AtMYB94	Nuclear	Nuclear	527	88%	2.00E-153
AtHP56	AT5G65790	AT3G49690	AtMYB68	AtMYB84	Nuclear	Nuclear	494	87%	2.00E-143
AtHP57	AT4G37780	AT3G49690	AtMYB87	AtMYB84	Nuclear	Nuclear	246	79%	4.00E-69
AtHP58	AT4G22680	AT3G61250	AtMYB85	AtMYB17	Nuclear	Nuclear	147	70%	3.00E-39
AtHP59	AT1G01520	AT4G01280	AtMYB	AtMYB	Nuclear	Nuclear	272	83%	7.00E-77
AtHP60	AT4G21440	AT4G05100	AtMYB102	AtMYB74	Nuclear	Nuclear	385	89%	1.00E-110
AtHP61	AT5G52260	AT4G25560	AtMYB19	AtMYB18	Nuclear	Nuclear	407	79%	2.00E-117
AtHP62	AT5G55020	AT4G26930	AtMYB120	AtMYB97	Nuclear	Nuclear	283	82%	7.00E-80
AtHP63	AT2G20400	AT4G28610	AtMYB	No MYB	Nuclear	Nuclear	419	73%	7.00E-121
AtHP64	AT5G11510	AT4G32730	AtMYB3R4	AtMYB3R1	Nuclear	Nuclear	329	78%	3.00E-93
AtHP65	AT3G09600	AT5G02840	AtMYB	MYB (LCL1)	Nuclear	Nuclear	682	80%	0
AtHP66	AT3G10590	AT5G04760	AtMYB	AtMYB	Nuclear	Nuclear	51.8	76%	1.00E-10
AtHP67	AT5G23650	AT5G08520	AtMYB	AtMYB	Nuclear	Nuclear	139	72%	8.00E-37
AtHP68	AT5G65230	AT5G10280	AtMYB53	AtMYB92	Nuclear	Nuclear	534	84%	9.00E-156
AtHP69	AT3G50060	AT5G67300	AtMYB77	AtMYB44	Nuclear	Nuclear	265	82%	1.00E-74

The coding sequence were aligned using BLAST 2 SEQUENCES to quantitate the sequence differences between the gene pairs.

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