Table 2 Summary of sequenced genome annotation information
Species | B. bronchiseptica | B. parapertussis | B. pertussis | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Strain Name | RB50 | 1289 | 253 | MO149 | Bbr77 | D445 | 12822 | Bpp5 | Bpp5 plasmid | Tohama I | 18323 | CS |
Contig (C) / Scaffold (S) | 1 | 1 | 4 C | 1 | 16 S | 11 S | 1 | 1 | 1 | 1 | 1 | 1 |
Genome Size (bp) | 5339179 | 5208522 | 5264383 | 5091817 | 5115717 | 5243194 | 4773551 | 4887379 | 12195 | 4086189 | 4043846 | 4124236 |
Gaps (Ns) | 0 | 628 | 2 | 0 | 146101 | 251924 | 0 | 0 | 0 | 0 | 0 | 0 |
G + C content (%) | 68.49 | 68.65 | 68.64 | 68.86 | 68.51 | 68.23 | 68.43 | 68.15 | 61.39 | 68.12 | 68.11 | 68.1 |
Predicted CDSs | 5009 | 4785 | 4845 | 4669 | 4667 | 4775 | 4402 | 4558 | 15 | 3806 | 3746 | 3822 |
Pseudogenes | 12 | 39 | 60 | 44 | 76 | 256 | 217 | 389 | 0 | 359 | 369 | 357 |
CDSs with Ns | 0 | 0 | 0 | 0 | 320 | 473 | 0 | 0 | 0 | 0 | 0 | 0 |
Average Gene Size (bp) | 983 | 1000 | 989 | 1002 | 974 | 953 | 1000 | 986 | 534 | 983 | 986 | 991 |
% of CDSs | 92.23 | 91.9 | 91.04 | 91.88 | 91.51 | 91.21 | 92.23 | 92.16 | 65.6 | 91.62 | 91.38 | 91.84 |
rRNA operons | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 0 | 3 | 3 | 3 |
tRNA | 55 | 54 | 54 | 54 | 54 | 54 | 54 | 54 | 0 | 51 | 51 | 51 |
IS481 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 230 | 239 | 236 |
IS1001 | 0 | 0 | 0 | 0 | 0 | 0 | 22 | 27 | 0 | 0 | 0 | 0 |
IS1002 | 0 | 0 | 0 | 0 | 0 | 0 | 9 | 0 | 0 | 5 | 7 | 4 |
IS1663 | 0 | 0 | 0 | 7 | 0 | 9 | 0 | 0 | 0 | 17 | 18 | 18 |