Table 4 Number of transcripts assembled (TA) with Cufflinks and the percentage they represent in each sample
From: Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition
Code | L1 | L2 | L3 | L4 | L5 | H1 | H2 | H3 | H4 | H5 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
TA | % | TA | % | TA | % | TA | % | TA | % | TA | % | TA | % | TA | % | TA | % | TA | % | |
= | 1971 | 8.7 | 2486 | 10.4 | 2526 | 11 | 2244 | 9.2 | 2762 | 10.2 | 2642 | 10.1 | 2363 | 9.4 | 2761 | 9.9 | 2119 | 10.4 | 2838 | 10.5 |
c | 4059 | 17.8 | 4202 | 17.6 | 3953 | 17.2 | 4203 | 17.3 | 4289 | 15.9 | 3955 | 15.1 | 4083 | 16.3 | 4183 | 15.0 | 3569 | 17.5 | 3961 | 14.7 |
e | 745 | 3.3 | 508 | 2.1 | 518 | 2.3 | 672 | 2.8 | 576 | 2.1 | 616 | 2.4 | 736 | 2.9 | 604 | 2.2 | 489 | 2.4 | 529 | 2.0 |
i | 3115 | 13.7 | 2719 | 11.4 | 2629 | 11.4 | 3153 | 13.0 | 3248 | 12.0 | 3301 | 12.6 | 3373 | 13.5 | 3637 | 13.1 | 2250 | 11.0 | 3234 | 12.0 |
j | 4348 | 19.1 | 4709 | 19.7 | 4436 | 19.3 | 4666 | 19.2 | 5373 | 19.9 | 5288 | 20.2 | 4833 | 19.3 | 5658 | 20.3 | 3488 | 17.1 | 5428 | 20.1 |
o | 1067 | 4.7 | 1175 | 4.9 | 1139 | 5.0 | 1157 | 4.8 | 1237 | 4.6 | 1142 | 4.4 | 1154 | 4.6 | 1170 | 4.2 | 1129 | 5.5 | 1204 | 4.5 |
p | 1570 | 6.9 | 1656 | 6.9 | 1566 | 6.8 | 1682 | 6.9 | 1635 | 6.1 | 1603 | 6.1 | 1606 | 6.4 | 1676 | 6.0 | 1699 | 8.3 | 1598 | 5.9 |
s | 60 | 0.3 | 77 | 0.3 | 72 | 0.3 | 76 | 0.3 | 94 | 0.4 | 86 | 0.3 | 71 | 0.3 | 72 | 0.3 | 68 | 0.3 | 100 | 0.4 |
u | 4447 | 19.5 | 4560 | 19.1 | 4541 | 19.7 | 4789 | 19.7 | 5468 | 20.2 | 5456 | 20.9 | 5089 | 20.3 | 5680 | 20.4 | 4421 | 21.7 | 5638 | 20.9 |
x | 1392 | 6.1 | 1838 | 7.7 | 1630 | 7.1 | 1663 | 6.8 | 2346 | 8.7 | 2066 | 7.9 | 1761 | 7.0 | 2415 | 8.7 | 1192 | 5.8 | 2496 | 9.2 |
Total | 22774 | 100 | 23930 | 100 | 23010 | 100 | 24305 | 100 | 27028 | 100 | 26155 | 100 | 25069 | 100 | 27856 | 100 | 20424 | 100 | 27026 | 100 |