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Table 2 Validation of the unplaced scaffolds positioning

From: High-resolution autosomal radiation hybrid maps of the pig genome and their contribution to the genome sequence assembly

Category Number Proportion (%) Sequence length Number of uSNPs
    Megabases Proportion (%)  
Discordant 100 7.0 6.9 8.7 149
Tentatives 1328 93.0 72.3 91.3 1798
noinfo 197 13.8 1.2 1.5 213
nosynt 187 13.1 5.0 6.3 249
sscvalid 166 11.6 12.4 15.6 242
valid 778 54.5 53.7 67.8 1094
  1. Categorization of unplaced scaffolds positioned on the pig genome. The table presents the number of scaffolds in the different validation categories (based on comparative genomics with the human genome): discordant , not mapped on the human genome (noinfo), mapped on the human genome but in a region not found on the pig genome (nosynt), on the same chromosome but at a substantially different (1Mb) location (sscvalid), and concordant chromosome and position (valid). The Tentatives category correspond to the sum of noinfo , nosynt , sscvalid and valid.