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Table 1 Summary of the identifications obtained for plant proteins using both LC-MS/MS and LC-MS E analyses

From: Combining proteomics and transcriptome sequencing to identify active plant-cell-wall-degrading enzymes in a leaf beetle

Protein band

Protein identification

Mascot (LC-MS/MS)

PLGS (LC-MSE)

nb

MW

Description

Accession

MW

Score

Peptides

Coverage

Score

Peptides

Coverage

1

22.3

B. rapa class IV Chitinase

BAH03380

28.7

115

2

13

2218

3

19.8

  

B. rapa thaumatin-like

AAN23104

9.2*

-

-

-

5885

5

42.8

2

26.3

ni

        

3

28.6

ni

        

4

35.6

B. juncea β-1,3-glucanase

ABC94638

37.8

574

8

32

10332

43

47.2

  

B. rapa β-1,3-glucanase

BAG68207

40.3

207

3

10

491

5

10.2

5

41.1

B. rapa Polygalacturonase-inhibiting prot 3

ACP28176

37.6

94

4

14

-

-

-

  

B. napus peroxidase

CBD08867

38.4

-

-

-

1878

21

14.6

6

44.3

A. lyrata peroxidase 33

XP_002875944

39.0

190

4

9

-

-

-

  

B. napus peroxidase

CAW62882

38.9

-

-

-

1617

27

13.8

7

43.7

B. rapa Polygalacturonase-inhibiting prot 3

ACP28176

37.6

165

5

18

-

-

-

8

25.3

ni

        

9

25.6

A. lyrata glycosyl hydrolase family 38

XP_002871594

116.3

133

3

2

561

11

3.6

10

28.1

B. napus cysteine protease

ABA71355

39.4

-

-

-

2039

11

15.3

11

30.1

ni

        
  1. *This accession corresponds to a partial protein sequence. ni: no identification.