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Table 1 Summary of the collected sequence data

From: Sequencing of the needle transcriptome from Norway spruce (Picea abies Karst L.) reveals lower substitution rates, but similar selective constraints in gymnosperms and angiosperms

  

Used in de novo assembly

Used in mapping

RNA source

Raw PE reads

PE reads

SE reads

PE reads

SE reads

Light extraction 1

28,073,980

5,668,652

3,229,442

14,751,144

3,738,405

Light extraction 2

20,442,438

4,589,450

2,930,651

9,693,554

3,077,721

Light extraction 3

23,554,246

5,183,788

2,929,447

12,575,038

3,217,660

Dark extraction 1

23,885,794

5,004,782

3,054,332

12,080,884

3,359,437

Dark extraction 2

22,157,136

4,929,488

2,929,710

11,349,636

3,084,920

Dark extraction 3

21,643,358

4,981,140

2,933,669

11,307,910

3,060,296

Total

139,756,952

30,357,300

18,007,251

71,758,166

19,538,439

  1. Collected number of sequences from the 6 different sequence libraries. The number of reads used for assembly and mapping divided as pair-end (PE) and single-end (SE) reads retained after cleaning and filtering as described in Material and methods.