|  | Used in de novo assembly | Used in mapping | ||
---|---|---|---|---|---|
RNA source | Raw PE reads | PE reads | SE reads | PE reads | SE reads |
Light extraction 1 | 28,073,980 | 5,668,652 | 3,229,442 | 14,751,144 | 3,738,405 |
Light extraction 2 | 20,442,438 | 4,589,450 | 2,930,651 | 9,693,554 | 3,077,721 |
Light extraction 3 | 23,554,246 | 5,183,788 | 2,929,447 | 12,575,038 | 3,217,660 |
Dark extraction 1 | 23,885,794 | 5,004,782 | 3,054,332 | 12,080,884 | 3,359,437 |
Dark extraction 2 | 22,157,136 | 4,929,488 | 2,929,710 | 11,349,636 | 3,084,920 |
Dark extraction 3 | 21,643,358 | 4,981,140 | 2,933,669 | 11,307,910 | 3,060,296 |
Total | 139,756,952 | 30,357,300 | 18,007,251 | 71,758,166 | 19,538,439 |