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Table 4 Summary of BLASTX searches to annotated protein databases for final assembly

From: Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote

 

No. of contigs with hits

No. of unique accessions

No. of unique protein hits

Zebrafish RefSeq

87,931

19,711

19,711

Uniprot/Swiss-Prot

80,012

26,396

17,669

Total

94,476

-

25,144

  1. Final assembly containing 370,798 contigs was used to search the zebrafish RefSeq protein database and the Uniprot database to identify the homologous genes represented by the catfish expressed sequences.
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BMC Genomics

ISSN: 1471-2164

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