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Table 2 The 30 overlapping common expressed mRNA transcripts between the OCI-Ly8 and HEK293 cell lines identified by exon microarray and tag-seq

From: A model system for assessing and comparing the ability of exon microarray and tag sequencing to detect genes specific for malignant B-cells

Gene

Exon

Tag-seq

 

Log2 FC

Adj. P-val.

MDL

Log2 FC

Adj. P-val.

MDL

TCL1A

6.976

<0.001

4.5%

10.069

<0.001

1.9%

HLA-DRA

6.135

<0.001

12.6%

9.541

<0.001

4.0%

CD74

5.891

0.001

5.0%

10.077

<0.001

2.0%

C13orf18

6.801

<0.001

6.1%

7.401

0.008

7.9%

ARHGDIB

6.188

<0.001

9.7%

7.349

0.008

15.4%

CKB

−5.573

0.002

NA

−9.526

<0.001

NA

LCP1

7.108

<0.001

7.4%

6.087

0.029

27.4%

CD52

5.63

0.002

9.1%

7.209

0.010

16.9%

FHL1

−5.736

0.001

NA

−6.229

0.028

NA

UCHL1

−5.212

0.006

NA

−7.714

0.005

NA

APBB1IP

5.408

0.003

18.4%

6.267

0.028

25.5%

GLUL

−5.323

0.004

NA

−6.592

0.012

NA

CD79A

6.132

<0.001

4.8%

5.858

0.033

33.1%

GCET2

5.347

0.004

14.8%

6.129

0.029

45.2%

CD79B

4.682

0.020

7.3%

8.077

0.003

7.7%

ELF1

5.07

0.008

6.9%

6.977

0.012

12.7%

CPNE3

−5.036

0.009

NA

−6.304

0.028

NA

CD53

6.122

<0.001

9.0%

5.392

0.049

47.4%

AMOT

−5.189

0.006

NA

−6.044

0.029

NA

ST6GAL1

5.254

0.005

5.8%

5.858

0.028

18.8%

ETS1

5.299

0.005

18.8%

5.781

0.036

26.6%

CNN3

−4.618

0.023

NA

−6.066

0.029

NA

MS4A1

4.435

0.037

13.9%

5.977

0.029

37.9%

MYB

5.117

0.007

14.5%

5.392

0.049

31.8%

APP

−4.419

0.039

NA

−5.858

0.033

NA

PTPRC

4.799

0.015

66.4%

5.392

0.049

67.7%

BANK1

4.677

0.020

35.5%

5.426

0.049

42.6%

ACSL5

4.685

0.020

29.3%

5.392

0.049

64.8%

BCL6

4.366

0.044

21.2%

5.524

0.046

50.2%

EBF1

4.34

0.046

15.1%

5.392

0.049

77.7%