Table 1 Summary of assembly and EST data
From: Searching for resistance genes to Bursaphelenchus xylophilus using high throughput screening
| Â | Infested P. pinaster | Control P. pinaster | Infested P. pinea | Control P. pinea |
|---|---|---|---|---|
No. of Reads | 450,053 | 375,168 | 342,141 | 226,608 |
Total Bases | 145,356,992 | 121,441,000 | 111,032,000 | 70,672,704 |
Average read length after trim quality | 322 | 323 | 324 | 311 |
No. of contigs | 12,157 | 8,808 | 9,555 | 4,175 |
Average contig length | 806 | 738 | 783 | 636 |
Range contig length | 32-3,968 | 12-4,031 | 38-4,665 | 11-2,828 |
No. of Contigs with 2 reads | 8 | 0 | 0 | 0 |
No. of Contigs with > 2 reads | 12,149 | 8,808 | 9,555 | 4,175 |
Contigs with BLASTx matches (E-value ≤ 10-6) | 531 | 422 | 521 | 207 |
*Contigs with BLASTx matches (E-value ≤ 10-2) | 3,532 | 2,169 | 2,339 | 1,436 |
Contigs determined by ESTscan | 511 | 435 | 413 | 424 |
Total no. of transcripts | 13,003 | 9,250 | 9,968 | 5,516 |