Transcriptomic and phylogenetic analysis of Culex pipiens quinquefasciatus for three detoxification gene families

Table 2 DGE sequencing statistics

	SG								S-lab
	Egg		3rd Larva		Pupa		Adult		3rd Larva
	N	%	N	%	N	%	N	%	N	%
Total raw tag	3762501		3790500		3524500		3769500		3727501
Total clean tag	3759150		3787346		3521826		3734683		3724228
Distinct clean tag	156922		118011		132376		113095		143277
Distinct tag mapping to gene	59206	37.7	42706	36.2	45666	34.5	41254	36.5	51264	35.8
Distinct unambiguous tag mapping to gene	48378	30.8	34772	29.5	37693	28.5	34449	30.5	39475	27.6
Unambiguous tag-mapped genes	10917	53.8	9808	48.3	10252	50.5	9759	48.1	10976	54.1
Distinct tag mapping to genome	48679	31.0	36533	31.0	40063	30.3	35062	31.0	47035	32.8
Total unknown tag	424236	11.3	397001	10.5	442991	12.6	415816	11.1	355720	9.6
Distinct unknown tag	49037	31.2	38772	32.9	46647	35.2	36779	32.5	44978	31.4

For each number (N) of tags or tag-mapped genes, the associated percentage (%) regarding the distinct clean tags (156922), the reference genes (20306), or total clean tags (3759150) is indicated.

ISSN: 1471-2164