Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster

BMC Genomics

Table 1 Basic genomic information of all four D . melanogaster isolated Providencia

Species	Strain	DSM¹		Sequenced size²	Physical size³	# of contigs or scaffolds	Average GC %	# of genes	Est. # of missing genes⁴
Providencia sneebia	Type	19967	chromosome	3.5 Mb	3.8 Mb	14	38.08	3482	275
			pPSN1	10787 bp	10787 bp	1	33.50	12	0
			pPSN2	7592 bp	7592 bp	1	35.05	12	0
			pPSN3	4321 bp	4321 bp	1	31.50	4	0
Providencia rettgeri	Dmel1	-	chromosome	4.2 Mb	4.3 Mb	9	40.20	4532	107
			pPRET1	5567 bp	5567 bp	1	40.81	6	0
Providencia alcalifaciens	Dmel2	-	chromosome	4.2 Mb	unk	15	41.17	3900	unk
			pPALC1	14114 bp	14114 bp	1	37.57	17	0
Providencia burhodogranariea	Type	19968	chromosome	4.5 Mb	unk	8	38.23	3985	unk

¹Strain number in DSM Culture Collection.
²Sum of the contigs or scaffolds lengths.
³Size of the physical chromosome as determined by optical maps. “unk” indicates unknown physical size.
⁴Estimated from the known length of sequence missing from these assemblies divided by the average gene length. “unk” indicates that the number of missing genes cannot be calculated due to an unknown physical size.

ISSN: 1471-2164