Table 2 Orthologous gene clusters with evidence for positive selection
From: Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster
Annotation | SEED Subsystem1 | EC2 | p-value |
|---|---|---|---|
homocysteine methyltransferase | methionine biosynthesis | 2.1.1.14 | 0.000496 |
xanthine/uracil/thiamine/ascorbate permease family protein | purine utilization | - | 0.002595 |
TolC precursor | multidrug efflux pumps | - | 0.003340 |
acetate permease ActP | acetogenesis from pyruvate | - | 0.003703 |
hypothetical protein with DUF177 | - | - | 0.007188 |
2-octaprenyl-6-methoxyphenol hydroxylase | ubiquinone biosynthesis | 1.14.13.- | 0.009478 |
UDP-N-acetylglucosamine | - | 2.4.2.227 | 0.010464 |
D-tyrosyl-tRNA(Tyr) deacylase | stringent response | - | 0.014392 |
sulfate transport system permease protein CysT | cysteine biosynthesis | - | 0.014526 |
yihD | - | - | 0.015702 |
antibiotic biosynthesis monooxygenonase | - | - | 0.015830 |
4-diphosphocytidyl-2-C-methyl-derythritol kinase | isoprenoid biosynthesis | 2.7.1.148 | 0.018713 |
Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY | glycerolipid and glycerophospholipid metabolism | - | 0.021835 |
dethiobiotin synthetase | biotin biosynthesis | 6.3.3.3 | 0.029052 |
LSU ribosomal protein L9p | ribosomal LSU | - | 0.029278 |
Ribonuclease E | ribosomal biogenesis, RNA processing & degradation protein glycerolipid and glycerophospholipid metabolism | 3.1.26.12 | 0.030756 |
acyl carrier | - | 0.031606 | |
predicted Fe-S oxidoreductase | - | - | 0.041952 |
flagellar transcription activator FlhC | flagellum | - | 0.044270 |
magnesium transporter | - | - | 0.048181 |