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Table 2 Genes known to be involved in mineral nutrient homeostasis that also have an ionomic phenotype expressed as moderated Z-score

From: High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome

Significant ionomic changes in yeast with gene knockout in haploid background

Known to regulate

Gene

Gene

Group

Ca

Cd

Co

Cu

Fe

K

Mg

Mn

Mo

-

Ni

P

S

Zn

   

Ca

YNL291C

MID1

C

5.14

-

-

-

-

-

-

-

-

-

-

-

-

-

   

Ca

YGL167C

PMR1

C

-

note 1

-

-

-

-

-

15.49

-

-

-

-

-

-

   

Ca

YKL190W

CNB1

C

15.95

-

-

-

-

-

-

-

-

-

-

-

-

-

   

K/Na

YDR456W

NHX1

B

-

3.98

-

-

-

-

-

−3.63

-

-

-

-

-

-

   

P

YJL012C

VTC4

B

-

-

-

-

-

-

−8.45

-

-

-

-

−6.10

-

-

   

P

YER072W

VTC1

B

-

-

-

-

-

-

−8.94

-

-

-

-

−8.59

-

-

   

S

YOL049W

GSH2

C

-

5.42

-

-

-

-

-

-

6.15

-

-

-

-

-

   

S

YJR137C

MET5

B

-

-

-

-

-

-

-

5.53

-

-

-

-

-

-

   

Fe

YHL040C

ARN1

B

-

4.66

-

-

-

-

-

-

-

-

-

-

-

-

   

Fe

YMR058W

FET3

B

-

-

-

-

-

-

-

-

6.50

-

-

-

-

-

   

Fe

YGL220W

FRA2

B

-

-

-

-

-

−3.39

-

-

-

-

-

-

-

-

   

Fe

YER145C

FTR1

B

-

-

-

-

-

-

-

-

5.01

-

-

-

-

-

   

Fe

YOL122C

SMF1

B

-

-

-

-

-

-

-

−7.18

-

-

-

-

-

-

   

Fe

YLR034C

SMF3

B

-

4.49

-

-

-

-

-

8.49

-

-

-

-

-

-

   

Cu

YPR124W

CTR1

C

-

-

-

-

-

-

-

-

10.37

-

-

-

-

-

   

Cu

YHR175W

CTR2

B

-

-

-

-

-

−3.91

-

-

-

-

-

-

-

-

   

Cu

YMR021C

MAC1

B

-

-

-

-

-

-

-

-

-

3.61

-

-

-

-

   

Mn

YBR290W

BSD2

B

-

9.30

-

-

-

-

-

9.15

-

-

-

-

-

-

   

Mn

YGR257C

MTM1

C

-

-

-

-

-

-

-

-

6.97

-

-

-

-

-

   

Mn

YGL167C

PMR1

C

-

note 1

-

-

-

-

-

15.49

-

-

-

-

-

-

   

Mn

YOL122C

SMF1

B

-

-

-

-

-

-

-

−7.18

-

-

-

-

-

-

   

Mn

YHR050W

SMF2

B

-

-

-

-

-

-

-

−7.40

-

-

-

-

-

-

   

Zn

YJL056C

ZAP1

B

3.72

−4.73

−3.79

-

-

-

-

-

-

-

-

-

-

-

   

Zn

YKL175W

ZRT3

A

-

3.76

-

-

-

-

-

-

-

-

-

-

-

-

   

Significant ionomic changes in yeast with single copy gene knockouts in diploid background

Known to regulate

Gene

Gene

Group

Ca

Cd

Co

Cu

Fe

K

Mg

Mn

Mo

Na

Ni

P

S

Zn

   

Mn

YER125W

RSP5

B

4.05

-

-

-

-

-

-

-

-

-

-

-

-

-

   

Mg

YOL130W

ALR1

B

-

-

-

-

-

-

−3.24

3.65

-

-

-

-

-

-

   

Significant ionomic changes in yeast with single open reading frame over expressed

Known to regulate

Gene

Gene

Group

As

Ca

Cd

Cl

Co

Cu

Fe

K

Mg

Mn

Mo

Na

Ni

P

S

Se

Zn

Ca

YGL006W

PMC1

B

-

4.23

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

Ca

YKL159C

RCN1

A

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

−5.90

Mg

YOR334W

MRS2

A

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

−4.34

Mg

YFL050C

ALR2

B

-

-

-

-

-

-

-

-

9.62

-

-

-

6.60

-

-

-

-

P

YPL031C

PHO85

B

-

-

-

-

-

-

-

-

5.85

-

4.93

-

4.52

-

-

-

-

P

YML123C

PHO84

B

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

−5.30

P

YNR013C

PHO91

A

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

-

−6.27

Cu

YPR124W

CTR1

B

-

-

-

-

-

5.60

-

-

-

-

-

-

-

-

-

-

-

  1. note 1: YGL168W that overlaps PMR1 also has significant increase in Cd, and YGL167C is also elevated in Cd but just below the significance cut off.