Figure 1
From: RNA-seq and microarray complement each other in transcriptome profiling
Comparison of absolute levels of gene expression by RNA-seq and microarray. Upper panel shows for the (A) wild-type and (B) hrpX mutant, the correlation between normalized fluorescence intensities of Agilent microarray with the RNA-seq counts from Illumina. Each dot represents the average values for each gene from all the biological replicates. Spearman’s correlation coefficient (rs) is indicated for each comparison. Lower panel shows rs between normalized fluorescence intensities of Agilent microarray with the RNA-seq counts from Illumina for all the combination of biological replicates for the (C) wild-type, and (D) the hrpX mutant. The rs values are plotted in the form of a heat map, where green color represents low rs value, while red represents highest rs value. The dendrogram provides a hierarchical clustering.