Table 2 Summary of Type III effector genes detected by RNA-seq and microarray
From: RNA-seq and microarray complement each other in transcriptome profiling
Locus Tag | Gene Symbol | RNA-seq | Microarray | Detected by | ||||
|---|---|---|---|---|---|---|---|---|
| Â | Â | log2FC | p-value | FDR | log2FC | p-value | FDR | Â |
XAC0286 | xopE | −1.3432 | 1.21E-07 | 1.69E-05 | −1.1813 | 0.00E+00 | 0.00E+00 | †|
XACb0011 | avrXacE3 | −0.9098 | 2.20E-04 | 1.51E-02 | −1.6363 | 0.00E+00 | 0.00E+00 | †|
XAC0754 | xopI | −1.1830 | 5.40E-04 | 3.11E-02 | −0.7287 | 0.00E+00 | 3.00E-05 | †|
XAC3085 | xopK | −2.1505 | 0.00E+00 | 0.00E+00 | −1.7157 | 0.00E+00 | 0.00E+00 | †|
XAC2786 | xopN | −3.5117 | 0.00E+00 | 0.00E+00 | −2.9897 | 0.00E+00 | 0.00E+00 | †|
XAC1208 | xopP | −1.1860 | 1.00E-05 | 6.20E-04 | −0.7583 | 0.00E+00 | 0.00E+00 | †|
XAC0277 | xopR | −1.1202 | 6.00E-05 | 5.10E-03 | −1.2360 | 0.00E+00 | 0.00E+00 | †|
XAC0543 | xopX | −3.0765 | 0.00E+00 | 0.00E+00 | −3.4423 | 0.00E+00 | 0.00E+00 | †|
XAC3230 | xopAI | −1.4353 | 0.00E+00 | 0.00E+00 | −1.1510 | 0.00E+00 | 0.00E+00 | †|
XAC2922 | hrpW | −2.0833 | 0.00E+00 | 0.00E+00 | −2.7723 | 0.00E+00 | 0.00E+00 | †|
XAC4213 | xopAD | −0.8816 | 2.60E-04 | 1.68E-02 | −0.3960 | 2.17E-02 | 2.72E-01 | ξ |
XAC4333 | xopQ | −0.6779 | 1.95E-02 | 3.51E-01 | −1.1190 | 0.00E+00 | 0.00E+00 | ψ |
XAC0601 | xopV | −0.5197 | 5.44E-02 | 5.33E-01 | −0.7367 | 0.00E+00 | 2.70E-04 | ψ |
XAC0076 | avrBs2 | −0.8632 | 1.79E-03 | 7.90E-02 | −0.566 | 5.00E-05 | 3.53E-03 | $ |
XAC3090 | xopL | −0.3402 | 2.58E-01 | 8.37E-01 | −0.6040 | 0.00E+00 | 0.00E+00 | ψ |
XAC3224 | xopE | −0.5716 | 2.45E-02 | 3.85E-01 | −0.2397 | 2.68E-02 | 4.48E-01 | $ |
XAC2009 | xopZ | −0.6456 | 9.45E-03 | 2.56E-01 | −0.4160 | 1.30E-04 | 9.38E-03 | $ |
XAC3666 | xopAK | −0.2756 | 2.89E-01 | 8.59E-01 | −0.2060 | 3.23E-01 | 9.82E-01 | $ |
XACa0022 | pthA1 | 0.0225 | 8.00E-01 | 9.80E-01 | 0.0790 | 6.69E-01 | 9.98E-01 | $ |
XACa0039 | pthA2 | −0.4501 | 2.09E-01 | 7.97E-01 | 0.0413 | 8.25E-01 | 9.98E-01 | $ |
XACb0015 | pthA3 | −1.1700 | 3.52E-03 | 1.28E-01 | 0.0723 | 7.13E-01 | 9.98E-01 | $ |
XACb0065 | pthA4 | −0.3423 | 8.51E-01 | 1.00E+00 | 0.0315 | 7.23E-01 | 9.98E-01 | $ |