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Table 1 Summary of marker validation outcomes for the indel and SNP markers (CAPS and HRM) generated in this study

From: A Toolkit for bulk PCR-based marker design from next-generation sequence data: application for development of a framework linkage map in bulb onion (Allium cepa L.)

Marker Number assessed Amplified Multi-locus (%) Polymorphic between Nasik Red and CUDH2150 (%) Mapped in F2
Indel 22 21 (95%) 0 11 (50%) 8 (36%)
CAPS 167 144 (86%) 32 (19%) 90 (54%) 57 (34%)
HRM 187 172 (92%) 33 (18%) 104 (56%) 16 (9%)
Total 376 337 (90%) 65(19%) 195(58%)