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Table 1 Low temperature responsive transcripts related to 'Response to abiotic and biotic stimulus' and 'Response to stress'

From: Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress

Probe Name

Description

4 h/0 h

9 h/0 h

9 h/4 h

AGI Locus

E Value

  

Log2 Ratio

  

'Response to abiotic and biotic stimulus' and 'Response to stress'

CUST_2332

AP2 domain transcription factor

-

4.02

-

AT4G34410

1.60E-23

CUST_14118

SSI2 (fatty acid biosynthesis 2)

2.31

3.69

1.38

AT2G43710

1.80E-57

CUST_12833

alpha-crystallin domain 31.2

-

2.73

2.33

AT1G06460

5.80E-21

CUST_12238

MAP kinase 4

-

2.55

-

AT4G01370

1.30E-16

CUST_5259

proline extensin-like receptor kinase 1

1.18

2.46

1.28

AT3G24550

3.40E-29

CUST_11123

heat shock protein 18.2

-

2.23

1.59

AT5G59720

2.10E-48

CUST_8810

Bet v I allergen family protein

1.81

2.16

-

AT5G28010

4.90E-06

CUST_7667

chitinase

-

2.04

-

AT3G12500

1.50E-11

CUST_11923

MEE14 (maternal effect embryo arrest 14)

-

1.85

1.81

AT2G15890

3.40E-42

CUST_6563

MLP-like protein 31

-

1.72

-

AT1G70840

1.00E-43

CUST_15946

MLP-like protein 31

-

1.42

-

AT1G70840

2.30E-38

CUST_11303

MLP-like protein 34

-

1.42

-

AT1G70850

2.60E-24

CUST_3534

Jasmonic acid carboxyl methyltransferase

-

1.18

-

AT1G19640

5.40E-40

CUST_10998

MLP-like protein 423

-

1.14

-

AT1G24020

2.00E-10

CUST_12659

beta-ketoacyl-CoA synthase

-

1.11

-

AT5G43760

1.40E-63

CUST_3051

CAT2 (catalase 2)

-

1.11

1.01

AT4G35090

7.60E-76

CUST_14725

heat shock protein 17.4

-

1.06

-

AT3G46230

4.10E-33

CUST_17985

TCH2 (calcium ion binding protein)

-

-

1.09

AT5G37770

2.10E-39

CUST_14955

ERF2 (ethylene response transcription activator 2)

-

-

3.35

AT5G47220

1.50E-33

CUST_7141

MAP kinase kinase 9

-

-

1.46

AT1G73500

1.70E-42

CUST_14327

RING-H2 finger A2A zinc ion binding

-

-1.04

-

AT1G15100

5.40E-14

CUST_13235

GAI (gibberellic acid insensitive) transcription factor

-

-1.07

-

AT1G14920

2.00E-108

CUST_14166

GSTU19 (glutathione transferase)

-

-1.12

-

AT1G78380

1.90E-70

CUST_9208

UDP-glucosyltransferase

-

-1.25

-

AT4G01070

8.80E-42

CUST_6759

MYB family transcription factor

-

-1.49

-

AT1G49010

9.30E-41

CUST_5609

RING-H2 finger A2A zinc ion binding

-

-1.97

-

AT1G15100

6.70E-39

CUST_18370

CBL-interacting protein kinase 25

-

-2.03

-

AT5G25110

9.90E-17

'Response to abiotic and biotic stimulus'

     

CUST_2683

early flowering 4

-

4.01

3.64

AT2G40080

1.00E-25

CUST_4383

gibberellin 2-beta-dioxygenase

-

3.63

-

AT1G30040

4.70E-51

CUST_11786

ubiquitin-protein ligase

-

3.48

3.32

AT1G68050

8.90E-60

CUST_12768

pesudo-response regulator 5

-

-

1.31

AT5G24470

2.80E-20

CUST_14809

SIGB (SIGMA FACTOR B)

-

-1.03

-

AT1G08540

5.30E-20

CUST_14095

polyubiquitin 3 protein binding

-

-1.05

-

AT5G03240

8.90E-17

CUST_11479

zinc ion binding

-

-1.18

-1.01

AT1G52520

1.00E-72

'Response to stress'

     

CUST_8448

peroxidase 72

-

3.42

2.57

AT5G66390

3.90E-35

CUST_8771

Homolog of yeast autophagy 18

-

2.24

-

AT3G62770

2.80E-63

CUST_11592

ozone-responsive stress-related protein

-

1.72

-

AT1G01170

7.10E-27

CUST_10706

ABA-responsive element binding protein 3

-

-1.18

-

AT3G56850

1.20E-35

CUST_11310

disease resistance protein (CC-NBS-LRR)

-

-1.18

-

AT1G61190

6.40E-06

CUST_18065

ABA-responsive element binding protein 3

-

-1.22

-

AT3G56850

2.30E-20

  1. Notes: Low temperature responsive genes are grouped to 'Response to abiotic and biotic stimulus' and 'Response to stress' based on the GO annotation. Positive and negative values of Log2 Ratio are either up- or down-regulated genes in the three pair-comparisons. No significant fold changes are indicated by "-".