Skip to main content

Table 5 Real-time RT-PCR verification of cold responsive gene under the different abiotic stresses and ABA treatment

From: Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress

Probe Name

Description

ABA

PEG

NaCl

Cold

AGI Locus

E Value

  

Log2 Ratio

  

CUST_12461

C2H2-type zinc finger ZAT-12 like

1.45

2.26

2.63

3.89

AT2G28710

1.60E-25

CUST_16591

Unknown protein

2.52

4.91

2.49

2.30

  

CUST_4383

gibberellin 2-beta-dioxygenase

1.12

1.71

2.52

2.65

AT1G30040

4.70E-51

CUST_17985

TCH2 (calcium ion binding protein)

-0.72

-0.62

-0.41

2.75

AT5G37770

2.10E-39

CUST_20765

AP2 domain transcription factor

1.08

-0.61

0.38

2.16

AT1G21910

4.70E-29

CUST_9007

JAZ7 (jasmonate-ZIM-domain protein 7)

0.11

-0.57

-0.43

2.16

AT2G34600

2.70E-10

CUST_9556

CAB1 (chlorophyll a/b binding protein 1)

1.24

0.21

0.65

1.94

AT1G29930

9.00E-134

CUST_13673

protein transmembrane transporter

3.22

1.85

4.04

1.73

AT4G16160

3.40E-55

CUST_5990

phosphoric monoester hydrolase

1.21

-1.58

0.09

1.64

AT1G17710

8.60E-90

CUST_14166

GSTU19 (glutathione transferase)

1.00

1.66

1.01

-0.74

AT1G78380

1.90E-70

CUST_19213

Unknown protein

0.41

0.00

-0.13

-1.43

  

CUST_7527

Unknown protein

-0.11

-1.21

-1.83

-0.70

  

CUST_1923

S-adenosylmethionine decarboxylase

0.59

-0.90

-0.64

-0.70

AT3G02470

1.40E-08

  1. Notes: Thirteen selected cold responsive genes were analyzed under different treatments, including 100 μM ABA, 25% PEG, 200 mM NaCl, and cold stress (7°C) for 6 h. Values that were dramatically higher (Log2 Ratio > 2) than those of control are shown in bold font.