Table 1 General statistics of 454 sequencing and assembly for lily and tulip
From: Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa
Genotype | Nr. reads | Nr. reads after filtration | Avg. read length bp | Nr. assembled reads | Singletons | Nr. contigs | Avg. EST length bp |
|---|---|---|---|---|---|---|---|
Connecticut King | 139,480 | 104,323(75%) | 336 | 77,097(74%) | 27,226(26%) | 14,773 | 615 |
White Fox | 326,539 | 221,597(68%) | 338 | 182,393(82%) | 39,204(18%) | 21,898 | 663 |
Star Gazer | 374,240 | 255,081(68%) | 341 | 202,707(79.5%) | 52,374(20.5%) | 24,700 | 688 |
Trumpet | 442,476 | 299,655(69%) | 343 | 241,782(81%) | 57,873(19%) | 26,075 | 694 |
Lily-All | 1,282,735 | 880,656(69%) | 340 | 471,378(53.5%) | 409,278(46.5%) | 52,172 | 555 |
Cantata | 310,973 | 207,229(67%) | 389 | 158,007(76%) | 49,222(24%) | 17,646 | 625 |
Princeps | 316,372 | 211,380(67%) | 386 | 165,282(78%) | 46,098(22%) | 17,007 | 632 |
T. fosteriana | 627,345 | 418,609(67%) | 388 | 293,043(70%) | 125,566(30%) | 24,713 | 629 |
Kees Nelis | 592,034 | 407,392(69%) | 281 | 303,558(74.5%) | 103,834(25.5%) | 38,716 | 559 |
Ile de France | 263,175 | 185,464(70%) | 283 | 125,293(67.6%) | 60,171(32%) | 24,557 | 517 |
Bellona | 221,334 | 149,768(67%) | 278 | 109,309(34%) | 40,459(27%) | 14,325 | 522 |
T. gesneriana | 1,076,543 | 742,624(69%) | 281 | 536,776 (74%) | 205,848(28%) | 54,575 | 557 |
Tulip-All | 1,703,888 | 1,378,898 | 314 | 827,772(60%) | 551,126(40%) | 81,791 | 514 |