Comparison of TE hits in and around genes to TEs in the genome. A. In all scaffolds over 1 Mb vs. inside genes, B. In all scaffolds over 1 Mb vs. the adjacent 1kb up and downstream of genes, C. In all scaffolds over 1 Mb vs. the adjacent 5kb up and downstream of genes. The bars represent the percentage of the hits of each superfamily among all transposon hits in the scaffolds (red) or inside and in the adjacent gene regions (blue). Asterisks represent significance after Bonferroni correction at: *p < 5 x 10-3 or **p < 5 x 10-4.