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Table 4 Mapping efficiency of simulated RNA-seq reads to the reference D . melanogaster transcriptome

From: Population and sex differences in Drosophila melanogaster brain gene expression

  

Mean mapping efficiency in %

 

Data set

Genes

Africa

Europe

P

All genes

13,520

97.63 (9.73)

97.65 (9.45)

0.07

Africa over-expressed

110

98.33 (6.45)

98.40 (6.74)

0.48

Europe over-expressed

218

97.93 (8.00)

98.17 (6.49)

0.78

  1. Standard deviations are given in parentheses. P-values are from Wilcoxon signed-ranks tests.
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BMC Genomics

ISSN: 1471-2164

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