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Figure 2 | BMC Genomics

Figure 2

From: Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

Figure 2

Comparative analysis of Rosa gene families with genome sequenced Rosaceae (apple, strawberry, and peach) and grape. Distribution of orthologous and paralogous gene families, including Rosa and apple, strawberry, peach and grape, were analyzed by OrthoMCL [34]. A. A total of 294,936 sequences from the eight different organisms were clustered into 242,234 (82.13%) families and singletons using OrthoMCL. B. Numbers of families and genes (in parenthesis) presented in each organism combination are given in the individual sections. 4,881 families (with 75,314 genes) were common to all species analyzed in this study, 592 families (with 7,451 genes) were shared in Rosaceae group. 6,808 were clustered in rose specific group with a total of 1,484 families. The species-specific gene families denote genes clustered within singe organisms.

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