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Table 1 Summary of sequencing and assembly results for rose flowers

From: Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

 

V

M

S

H

Raw data

Read No.

151,906

132,974

107,816

115,707

Read length (bp)

34,317,306

29,145,021

23,643,473

26,107,242

Avg. read length (bp)

225.91

219.18

219.30

225.63

Statistics after pre processing

Read No.

142,421

116,397

95,875

109,067

 

(93.76 %)

(87.53 %)

(88.92 %)

(94.26 %)

Read length (bp)

33,112,590

27,277,537

22,306,881

25,260,565

Avg. read length (bp)

232.50

234.35

232.67

231.61

Sequence clustering and assembly

Clustered reads

120,931

97,250

73,768

84,281

Clustered range

2-4,792

2-3,726

2-1,353

2-980

Contigs (assembled by TGICL a)

14,167

12,287

12,618

15,366

Singlets b

3,501

3,261

3,406

3,814

Singlets c

17,989

15,886

18,701

20,542

Avg. contigs length (bp)

397.60

441.52

416.45

369.33

  1. a TGICL: TIGR Gene Index CLustering tools, b reads that are clustered but not assembled into contigs, c un-clustered reads by TGICL.
  2. Abbreviations: V: ‘Vital’; M: ‘Maroussia’; S: ‘Sympathy’; H: ‘Haedang’.