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Table 2 Gene and unigene annotations for rose and related species

From: Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

 

V

M

S

H

Apple

Strawberry

Peach

Grape

Gene/unigene

35,657

31,434

34,725

39,722

63,541

34,809

28,702

26,346

BLAST match a

18,414

19,214

20,264

20,349

51,525

24,764

26,163

26,346

Contigs

9,062

9,425

9,395

9,816

    

Singlets

9,352

9,699

10,869

10,533

    

Domains b

Total

10,646

11,353

11,642

11,265

72,220

36,042

37,433

32,566

Distinct

2,262

2,315

2,383

2,369

3,311

3,333

3,297

3,305

  1. a The number of gene or unigene annotated by BLAST search against NR database with expect value (e-value) lower than 1e-10.
  2. b Number of domain identified by implementing Pfam. Abbreviations: V: ‘Vital’; M: ‘Maroussia’; S: ‘Sympathy’; H: ‘Haedang’.
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BMC Genomics

ISSN: 1471-2164

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