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Table 3 miRNA distribution

From: Small RNA and transcriptome deep sequencing proffers insight into floral gene regulation in Rosa cultivars

 

V

M

S

H

 

Total sRNA No.

7,440,941

11,814,817

9,210,732

11,368,773

 

Trimmed sRNAs

7,339,459

11,646,177

9,049,517

11,201,170

 

Unique sRNAs

2,231,008

2,520,957

2,590,637

2,955,175

 

Preprocessing

 

  tRNAs

12,638

14,647

11,942

12,925

 

  rRNAs

50,020

70,718

49,317

56,084

 

  other RNAs

1,552

2,123

1,774

1,518

 

Masking

2,166,798

2,433,469

2,527,604

2,884,648

 

18nt to 26nt unique sRNAs after pre-processing

2,097,062

2,338,032

2,439,306

2,824,442

 

18nt to 26nt total sRNAs after pre-processing

5,400,748

6,498,879

6,456,832

6,930,547

 

Total identified miRNAs

    

Total

sRNA align to strawberry genome

754,825

919,179

815,779

600,561

 

Total predicted miRNAs (Unique)

183 (122)

186 (125)

186 (125)

179 (120)

192 (130)

Conserved miRNAs in miRBase (Unique)

155 (101)

155 (102)

158 (104)

154 (100)

159 (105)

Novel miRNAs (Unique)

28 (21)

31 (23)

28 (21)

25 (20)

33(25)

Found by homology search with miRBase a

136

137

137

128

137

Total miRNA groups (Major)

78 (40)

82 (42)

80 (40)

75 (41)

84 (53)

Conserved miRNA groups (Major)

63 (27)

65 (28)

65 (28)

61 (28)

65 (37)

Novel miRNA groups (Major)

15 (13)

17 (14)

15 (12)

14 (13)

19 (16)

  1. a The number of miRNAs searched by BLAST against known miRNAs in the miRBase [86]. Abbreviations: V: ‘Vital’; M: ‘Maroussia’; S: ‘Sympathy’; H: ‘Haedang’.
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