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Table 3 Multiple regression predictive models (A) and analyses of variance of haplotypes (B)

From: Nuclear genomic control of naturally occurring variation in mitochondrial function in Drosophila melanogaster

Trait Analysis Variable SNP Location Estimate t P-value
   Intercept -- 2009.79 55.49 <0.0001
ST3 Sex Average 3L _651118 Gale (u3) −290.43 −5.56 <0.0001
  r2 = 0.666 3R _18209173 CG31169 (cds) 209.42 −5.78 <0.0001
   Intercept -- 237.31 44.29 <0.0001
ST4 Sex Average 3R _16981874 SNF4Agamma (in) −15.71 −5.08 <0.0001
  r2 = 0.686 2R _3529122 CG43340 (#) 18.15 5.84 <0.0001
   Intercept -- 2.693 124.52 <0.0001
P:O ratio Sex Average 2L _18554474 Pde11(in) 0.046 3.71 0.0007
  r2 = 0.744 3L _2682962 CG12187(in) −0.070 −5.12 <0.0001
   3L _9640097 fry(in) −0.053 −3.90 0.0004
B
Trait Analysis Source of Variation df a MS b F P -value σ 2 c
   Haplotype 3 13648093 24.3 <0.0001 144977
ST3 Sex Average Line (Haplotype) 36 577585 1.9 0.0014 19080
   Error 535 302190 -- -- 302038
   Haplotype 3 127247 22.4 <0.0001 677.3
ST4 Sex Average Line (Haplotype) 36 5689 1.3 0.1430 84.7
   Error 535 4498 -- -- 4495.6
   Haplotype 6 1.26 21.8 <0.0001 15.0
P:O ratio* Sex Average Line (Haplotype) 33 0.06 0.9 0.6922 0.0
   Error 505 0.07 -- -- 67.0
  1. Markers are listed in the order in which they are entered in the model. Estimates of effects are for (Minor allele – Major allele). ST3, mitochondrial State 3 respiration; ST4, mitochondrial State 4 respiration. In, intronic; cds, coding sequence; #, missense; u3, 3’ UTR. aDegrees of freedom. bMean Squares computed from Type III Sums of Squares. cRestricted maximum likelihood estimates of variance component . * σ2 multiplied by 103.