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Table 3 Comparison among four databases

From: MirSNP, a database of polymorphisms altering miRNA target sites, identifies miRNA-related SNPs in GWAS SNPs and eQTLs

 

MirSNP

PolymiRTS 2.0

Mirsnpscorea

Patrocles

Data source

NCBI

UCSC

UCSC

UCSC

Predicting strategy

miRanda

TargetScan

 

L motifs[17]

Results

  miRNA-related SNPs

414510

117037

19513

26578

  miRNA-related SNPs with MAF > 0.01

32822

21938

19208

7334

  Involved Genes

17569

13129

8495

11314

  Involved mature miRNAs

1921

1738

1222

846

  Records (SNPs with MAF > 0.01)

121796

78351

69026

10908

Overlap with MirSNP

  Number of SNPs (MAF > 0.01) coinciding with MirSNP

 

15913

17481

5759