Analysis of the peroxisome proliferator-activated receptor-β/δ (PPARβ/δ) cistrome reveals novel co-regulatory role of ATF4

Table 2 ChIP-seq reads of DNA from wild-type ( Pparβ/δ ^+/+ ) and Pparβ/δ -null ( Pparβ/δ ^−/− ) keratinocytes

	Pparβ/δ ^+/+			Pparβ/δ ^−/−
	Input	DMSO	GW0742	Input	DMSO	GW0742
Reads (Run 1)	6173615	11774655	17489428	13397018	9111547	10955382
Reads (Run 2)	11402103	9298650	10020494	13963586	11731976	11870020
Total Reads	17575718	21073305	27509922	27360604	20843523	22825402
Quality Control Passed Reads	17521514	20910231	27379614	27247515	20625001	22363483
% QC Passed	99.69	99.23	99.53	99.59	98.95	97.98
Mapped Reads	16016425	15351905	19552539	25239456	14630180	14770720
% Mapped	91.41	73.42	71.41	92.63	70.93	66.05

The number of reads per sample is shown for each of two runs, along with the total number of reads obtained for bioinformatic analysis. The percentage of total reads that passed quality control as described in Materials and Methods (% QC Passed) and the number (Mapped Reads) and percentage of reads that were successfully mapped to the mouse genome (% Mapped) are shown.

ISSN: 1471-2164