Table 2 SNP quality by MAF and subset 1
From: The effect of strand bias in Illumina short-read sequencing data
|  | MAF 0–0.1 | MAF 0.1-0.2 | MAF 0.2-0.3 | MAF 0.3-0.4 | MAF0.4-0.5 | Overall |
|---|---|---|---|---|---|---|
All Seq SNPs | 70825/2.35 | 8454/1.93 | 26074/1.94 | 19092/1.96 | 30532/1.85 | 174977/2.08 |
Overlapped SNPs | 4123/2.99 | 2781/2.8 | 2799/2.73 | 2160/2.53 | 2504/2.69 | 14367/2.78 |
Seq SNPs - Chip SNPs | 66702/2.31 | 25673/1.86 | 23275/1.87 | 16932/1.9 | 28028/1.79 | 160610/2.03 |
dbSNP SNPs in Seq | 53520/2.43 | 23458/2.21 | 21798/2.23 | 16359/2.2 | 26152/2.05 | 141287/2.26 |
dbSNP SNPs not on Chip | 49397/2.39 | 20677/2.15 | 18999/2.17 | 14199/2.16 | 23638/2.00 | 126920/2.21 |