Table 1 Reads mapped to A. marginale from three sequencing platforms
From: Comparative genomics and transcriptomics of trait-gene association
Platform | Strain | Total reads | A. marginale reads | % of reads mapped to A. marginale | Average matched read length |
|---|---|---|---|---|---|
Roche 454 | STM1 | 726,051 | 269,730 | 37.1 | 381.7 |
FL2 | 1,018,447 | 326,440 | 32.0 | 396.5 | |
Ion Torrent | STM | 1,004,747 | 295,629 | 29.4 | 111.0 |
FL | 2,043,607 | 577,284 | 28.2 | 111.2 | |
Illumina | STM | 88,650,713 | 4,604,993 | 5.2 | 100 |
FL | 81,507,967 | 3,845,853 | 4.7 | 100 |