From: Construction of the first genetic linkage map of Japanese gentian (Gentianaceae)
Markers | Repeat motif | Sequence (5′→3′) | Product size (bp) | Amplification | Accession no. | |
---|---|---|---|---|---|---|
Forward | Reverse | |||||
AC1 | (AC)11.(AC)3.(TA)4 | TATCAGCAAGATGGTGCATGGTTT | CCGAAAACAGGTAAAGTGTCCATGA | 160 | G. scabra | AB755678 |
AC2 | (AT)3.(AC)11 | AGTGGGCTGGTTGGGTTTAGATTC | TACTTCAGAAGGCTGGGGTCTACG | 250 | G. triflora / G. scabra | AB755679 |
AC62 | (AC)6.(CA)8.(CA)7 | TAGTTTCTTTGGTGTGGGACCTGG | GGAGGAGCGTTGCTATGTTGAAGT | 129 | G. triflora / G. scabra | AB755680 |
CA10 | (CA)12(TA)3 | CTGGAAAACACCCAACACACACAT | ATCCATGTCCTCTCCGTGTAGCTC | 187 | G. triflora / G. scabra | AB755681 |
CA28 | (CA)9 | GCAAAATCTTTTTATTTCTTGTGTGCG | CAGCACTGTGCAAGTCATATCTTGTG | 134 | G. triflora / G. scabra | AB755682 |
CA36 | (CA)3.(CA)8 | GTGGGGAAAACAAATAGCTCTTGAGG | TCGATCATTACCTGTTGTTTCAAGAT | 131 | G. triflora / G. scabra | AB755683 |
CA43 | (CA)4(AC)7 | ATTTCCTGAAACAATGAAGTCTTATG | CGTGAAACAAAGGGATCAAAAGTATC | 200 | G. triflora / G. scabra | AB755684 |
CD3 | (GGA)5.(GA)3 | GGATCAAAAGCGATGGATCTGTTC | ATGAAGCTCCTCACCTTGTCAACC | 156 | G. scabra | AB755685 |
CD12 | (AGT)3.(AGT)7 | CCCCACCACATGGACCATAATAAC | ATATGGAGCGGGAGGTGAAGTTTT | 183 | G. triflora / G. scabra | AB755686 |
CD26 | (AG)3.(TAA)7(CAA)2 | TCTCACAAGCAATGCAAGACCAAT | TGGTGTACTTAGCCCTTTCGTCGT | 207 | G. triflora / G. scabra | AB755687 |
CD35 | (GCG)5.(CAG)3 | TAGGGACGTACCCGACTCAAGAAA | GAGAGAAGTAGGAGGAAGAGCCGC | 225 | G. scabra | AB755688 |
CD41 | (ACA)6 | TCAACGTCCAGTCCGATAATGAGA | GAACCGCACAGTAAACGCCTAATC | 240 | G. triflora / G. scabra | AB755689 |
CD43 | (AT)3.(AC)7(TA)6 | TGTGCATCACTTTACTGCTTTCTCTTG | CCCAAGAATCAACTTGGCTTGAAC | 244 | G. triflora / G. scabra | AB755690 |
CD44 | (AT)10 | TACTTGGCGGAGAGGCTTATGAAA | ACACCACAAAAGGACAGTCGTTGA | 244 | G. triflora / G. scabra | AB755691 |
HC5 | (CA)10 | GCTTTAGCAACTCCCTCAATCCCT | GGGAAGTGAGTAATGTTCAGGTGTC | 115 | G. triflora / G. scabra | AB755692 |
HC6 | (CA)14(TA)3.(TA)3 | TCCTAACATCGGTGCGAGAATGTA | AGTTTGTTTCAGAACTTGGGGCAG | 115 | G. scabra | AB755693 |
HC7 | (CA)10 | ACGCTGAACCTGTGAGATTTCTTG | AACTCCCATGGACCAGACACATTT | 119 | G. triflora / G. scabra | AB755694 |
HC18 | (AC)5.(AC)4 | CAAAGCAGCAGCAAATATAGGGAA | GCTCAGCAATTGTCATTCCTGCTA | 156 | G. scabra | AB755695 |
HC20 | (CA)3.(TG)6 | TCTCGGTTGAATAGAACTCACCCC | TCGTAGACCTAGCACTTTCACGCA | 158 | G. scabra | AB755696 |
HC23 | (GA)14 | TAGAAGTGTGTGCAATTTGGGCAT | AAAAGCAGATAAAGGAAGAGGGGG | 164 | G. triflora / G. scabra | AB755697 |
HC26 | (CA)9 | AGCTTGACGTTGTCTGAGGGTTTC | GCAAAAGTTTAATCGTAAGCAGGCA | 176 | G. triflora / G. scabra | AB755698 |
HC29 | (CA)5.(AC)3.(CA)7(TA)3 | CACACGCTAACAAGCACACAGCTA | TTCCTGCTTTTGTCATCCAAAGGT | 194 | G. triflora / G. scabra | AB755699 |
HC41 | (CA)10.(ACA)6 | CGTTTCTTGAGCTTATTTTTGGCG | CATTTCAGATTTCTGCCACCCTTC | 219 | G. triflora / G. scabra | AB755700 |
HC48 | (TA)3T(TA)4G(AT)3.(CA)7 | GTGTATGGCTCGAATTGTGGACTG | AAGTGGGTCTTGGGGTGAAATACC | 227 | G. scabra | AB755701 |
HC49 | (CA)9 | CTTTTCCCATGCATAGAATCTCCG | GCTATGGCTGGCTAGTTTCCTTTC | 229 | G. scabra | AB755702 |
HC71 | (CA)3CT(CA)11 | TGAAGTCACAAACTGCGTGTTGAA | GTGGAACCTTTGTCTTCTTCCCCT | 253 | G. triflora / G. scabra | AB755703 |
HC72 | (CA)10 | AGGAATCATTTGAAGGGGTTGGTT | CCGGTAATTCCCTTGAGGCATAAT | 256 | G. scabra | AB755704 |
HC90 | (CT)3.(AC)3(CA)12(TA)8 | GGTAATGCTTATGCAAGTTTGAAGG | TATTCTCCGTGTGTCCAGCTATGG | 285 | G. triflora / G. scabra | AB755705 |
HC91 | (CA)7.(CA)6.(CA)6.(CA)9.(CT)6.(CT)3 | GCATTATTTTTCTGGAGCTAGGGGA | GGGCAGCCCTGGATAATACCTCTA | 286 | G. triflora / G. scabra | AB755706 |
HC100 | (TA)5.(CA)8.(GA)3 | GCCGTTTTTCCTGTCCTAAGGAGT | GGGCTTGGCGAGGTAGAACTAAAA | 294 | G. scabra | AB755707 |
HC103 | (AG)18 | ATTTCCTCCTGCTACATGAACCCA | GCTGAGAAAGAAGCCAACTCCAAA | 299 | G. triflora / G. scabra | AB755708 |
HG13 | (CA)12 | CAGTTCCACTGAAATTCCGCAGAT | TATTCGTTGAAAATGGCACCCTTC | 102 | G. scabra | AB755709 |
HG16 | (TC)3.(CA)15(TA)3 | CCATCAAATACCCATTACCACAGAA | TCTTATCTGAACGGGAAGCCCATA | 259 | G. triflora / G. scabra | AB755710 |
HG26 | (AC)20(AT)11 | GCAATTTCTTGAACCCGTAAACCA | TGTGGAAACACGTGATGCTGAATA | 149 | G. scabra | AB755711 |
HG42 | (CA)15 | GCATCATATCCCAAGGTCCATCTC | GCGTAGATACCATCTCCGGTCAAC | 236 | G. triflora / G. scabra | AB755712 |
RC13 | (CA)14(TA)9.(AC)4.(TA)7 | ACGGATACGGGAGTGTATTTGTAA | TTTATTTTAATCTTGCCCCGGACC | 185 | G. scabra | AB755713 |
RC25 | (CA)11 | ACCAAATAGGTGTATCCGTCCGTG | TCAATCCAGGTAAATGAGACTGCTTTC | 142 | G. scabra | AB755714 |
ReSN7 | (TA)3.(CA)16(TA)4C(TA)4 | CACTGCCGGTAAGATTGGATACCT | TATAAGGACTCAGTGTCGGGACGG | 173 | G. triflora / G. scabra | AB755715 |
ReSN22 | (CA)13(TA)4.(CA)4 | TGTCAGTCGGGTAAGCACTTTCAG | ATCAAAGCACTTGTCTGTCCTCCC | 146 | G. triflora / G. scabra | AB755716 |
ReSN84 | (AC)11 | TGTAAAGGGCAAAGGAGGAAAACA | AGCTGTAAGTTGAAAACGCCTTGA | 110 | G. triflora / G. scabra | AB755717 |
SA3 | (CA)12 | GTACCTCTGCACATTTGTTTGGTA | GCTCTTTTCTAGCCGTTTTATGTC | 182 | G. triflora / G. scabra | AB755718 |
SA4 | (GA)8 | CTTCTTCTCATTCCAGTTTCACCT | AGCACCTAGATTACACGTACACCA | 254 | G. triflora / G. scabra | AB755718 |
SA12 | (CA)10 | GTAGGACTCTGCACAAGAAGTAGGT | ACAATAAATATGGAGGCTGTAGGC | 224 | G. triflora / G. scabra | AB755719 |
SH9 | (AG)15 | CTAATGTAGGACTGAATGACCCG | GCAAGAAGTAAAACGTAAAGCCTG | 200 | G. triflora / G. scabra | AB755720 |
SH14 | (AG)13 | AGCACATTTCCCGCTACAAC | TCTTCAGGAGGAGGAGTTTGAGT | 247 | G. triflora / G. scabra | AB755721 |
SN7 | (CA)8 | AAGAAACTTGGGATGTTTCAGC | AAGCTGCATTTGTTGAAGATCA | 197 | G. triflora / G. scabra | AB755722 |
SN24 | (CA)11 | TGGCTTGTTTTGTATTGGAGTG | GTTCATTCCCCGGATAAGAAAT | 157 | G. triflora / G. scabra | AB755723 |
SN27 | (AC)11 | CATGGTGAGTTGGTTGAGAAAG | CCATGAATTCAGGTGAAAGTGA | 167 | G. triflora / G. scabra | AB755724 |
SN28 | (CACC)7 | CAGCAGACAATCAAAACTTTCAA | TAGTCTGTTCTGTGGGGAGTGA | 166 | G. triflora / G. scabra | AB755725 |
SN39 | (AC)11 | ATTCTGCTCTAGCCTTCCCTCT | GAACCACATGTCCTTCATCACT | 152 | G. triflora / G. scabra | AB755726 |
SN40 | (CA)6 | CCAAATGGAAAATATACAGCCA | GTTCTGTTTAGGGCTTGGGGT | 152 | G. triflora / G. scabra | AB755727 |
SN48 | (AC)7 | TGCTGTAATTTGTGTGGCATTT | AATTTAAAAGCCAGCCTTAGCC | 224 | G. triflora / G. scabra | AB755728 |
SN55 | (AC)8 | AGTTAAACCTGCAAAAATTGGG | GTTTTTGTTTATACGCGCACAC | 161 | G. triflora / G. scabra | AB755729 |
SN73 | (CA)12 | ACAAGAAGCCAGGTTCCACTTA | TCCGATTTGAGTTGTATTGCAT | 167 | G. triflora / G. scabra | AB755730 |
SN87 | (CA)11 | GCACACACACCACTCCATCTTA | TGGATCAAGTTCATTGTTGCAT | 175 | G. triflora / G. scabra | AB755731 |
SN124 | (AG)12 | ATGTAGGACTGAATGACCCGAC | AGATGCAAAGCTTGTGGTTATT | 154 | G. triflora / G. scabra | AB755732 |
SN143 | (AC)10 | CCAGAAAGGGTTTTAAATGCAA | TCCTTTCAATTGCTTGAGTTTTT | 151 | G. triflora / G. scabra | AB755733 |
SN157 | (AC)11 | CTCACCATCACTCGATACTGGA | ACGGAAGTTTACGGTGATTCTG | 171 | G. triflora / G. scabra | AB755734 |
SN175 | (CA)8 | CACCAACACAAAGTTAGCTCCA | ACAGGCTTATGGGCTGTATGAG | 162 | G. triflora / G. scabra | AB755735 |
SN181 | (CA)6 | TTCAGTTCCACCCACACTACAC | ACACATGGTAGCTTCCCTTGAA | 204 | G. triflora / G. scabra | AB755736 |
SN182 | (AG)13 | AATAGAGGCGTCTTCATCATCA | CGTAACGATAAATCCCGCTAAA | 151 | G. triflora / G. scabra | AB755737 |
SN186 | (CA)6 | TGGTCATTTTGTGGAGTTTCAG | TGGCAGAAGAGGTGTAGAACAA | 204 | G. triflora / G. scabra | AB755738 |
SN224 | (AC)8 | TATGCCTTTCGTGCTCTGACTA | GGTGATAAGCTCTTATGTTGCG | 151 | G. triflora / G. scabra | AB755739 |
SN238 | (AC)12 | AAAAGACCAAACTTTCCCTGAC | GCTAAGCGAGCCTAAGATGTTC | 154 | G. triflora / G. scabra | AB755740 |
SN260 | (CA)8(TA)5 | CACCATAACTCGAATGTCACTG | AGCGGGCGTTACAATTAATATC | 241 | G. triflora / G. scabra | AB755741 |
SN282 | (AC)6 | TGGCAGAAGAGGTGTAGAACAA | TGGTCATTTTGTGGAGTTTCAG | 205 | G. triflora / G. scabra | AB755742 |
SN285 | (AC)12 | CCACTGATTGATGCATTTCATA | CGTTATTCTGTGCTTGAACCTG | 157 | G. triflora / G. scabra | AB755743 |
SN327 | (AC)11 | CAGGAGTACAACTGAGGCAGAG | ACCCAACTTCTCTCAAACGAAA | 232 | G. triflora / G. scabra | AB755744 |
SN328 | (CA)12 | AATTCTCCTCTTCTGCTTTTGC | TCAATTCATTCATTCAGAACCG | 169 | G. triflora / G. scabra | AB755745 |
SN336 | (AC)13(AT)9 | AAAAGAAAAAGGATGTTTGAGCA | GCAAGAAACACAACACAAGCAT | 193 | G. triflora / G. scabra | AB755746 |
SN343 | (CA)12 | TGGTGCAACAGGTAGATAACACA | GTTGCGTACTGACTCCTGTCTG | 189 | G. triflora / G. scabra | AB755747 |
SN345 | (AC)7 | ACTAGACCCTCACCAAATGCC | TGTCCCTATTCTGTTTATGCTCTT | 181 | G. triflora / G. scabra | AB755748 |
SN355 | (AC)8 | GACTCCATATTGCACTGGACAA | TCCCCCTCTGTACACATATCCT | 214 | G. triflora / G. scabra | AB755749 |
SN381 | (AC)6 | GCAAAAGAAAGCTCAAACGAAT | CACAATCTCTTGGTCCCTTTGT | 172 | G. triflora / G. scabra | AB755750 |
SN388 | (CA)11 | CTGCACAAATAGCAAAAGCATC | TACCCGACGATGGTAATTGTAA | 167 | G. triflora / G. scabra | AB755751 |
SN463 | (AC)8 | GGAAGAACTGAAGCTTCTGGAG | CAAGGAGACAACACTTGACACAG | 164 | G. triflora / G. scabra | AB755752 |
SN527 | (TC)4(AC)8 | AGCTCCCAAAGTATCACTCCAA | CTGACATTTTACCAAGCCACAA | 185 | G. triflora / G. scabra | AB755753 |
SN563 | (AT)7 | CATGTCCTCTGTGAGGTCAAAA | GTCGGATTTTGGAGATTCGTAG | 158 | G. triflora / G. scabra | AB755754 |
SN578 | (CA)8 | TCCCCCTCTGTACACATATCCT | GACTCCATATTGCACTGGACAA | 214 | G. triflora / G. scabra | AB755755 |
SN583 | (CA)10 | TTTCATTGCACCTGGACATAAG | AAAGTCAATGAATTCCAAAGGC | 151 | G. triflora / G. scabra | AB755756 |
SP1 | (CA)13 | ATGATGATTGGTCAGCCTCGG | TGCTGGTTTGGTATTGAACTCTTCG | 216 | G. triflora / G. scabra | AB755757 |
SP8 | (AC)12 | CTCTGCAACCAAACAATACCCCAT | GGAAGGGGATGAATCGAGGAGTTA | 327 | G. triflora / G. scabra | AB755758 |
SP15 | (GA)17 | GGATTTCGAGCGATTTTCTACTC | GCAGAAGTTTTCCTTACGATGG | 248 | G. triflora / G. scabra | AB755759 |
SP17 | (AC)7 | AAAACTCAGGAAAGCCGCAATA | AATAGCCTCCCAAGCACCCTATAA | 181 | G. triflora / G. scabra | AB755760 |
SP21 | (AC)13 | GGGACCAACACCATTATTTCCCTT | GGAAGATCACATTTATGCCCCTCA | 307 | G. triflora / G. scabra | AB755761 |
SP28 | (TG)12.(GA)26 | CCGCGTAAGTGGCATACTCATAA | GTTACTTCCTTCAACCAGGGTATCTG | 334 | G. triflora / G. scabra | AB755762 |
SP29 | (AC)10 | TGTAGTTGAGCAAGCCAAATCTGC | GTGTAAGCCCAATAAGTCAATTCATGC | 212 | G. triflora / G. scabra | AB755763 |
SP37 | (AC)11(CA)6 | CAGAAGGCTGGGGTCTACGAAATA | CCTAGTGGGCTGGTTGGGTTTAG | 250 | G. triflora / scabra | AB755764 |
SP43 | (AC)15 | ACTTGGGGCAGCAGAAACTTAACA | TTGACCTAACATCGGTGCGAGAAT | 107 | G. scabra | AB755765 |
SP44 | (CA)8.(TA)11(CA)12 | CGAATAAAAGGAACCGAACCCAAT | AAGGGACGCCGCTACTTTCTACAG | 281 | G. scabra | AB755766 |
SP47 | (CA)11 | GAAAGTTGAATTACTTGCAGGCTC | TTCATATTAGACGGGTTTGGGTC | 280 | G. scabra | AB755767 |
SP48 | (AC)10 | CCGATTCAACGCCTAGCAACT | TCAAGAAACACGATACTGATGTGGG | 271 | G. triflora / G. scabra | AB755768 |
SP49 | (AC)10(AT)6 | TCCGTTGTTCTTCGTAAAGGTTGG | AGAGTGATTTCTTCTGGCTCGTTTCTT | 337 | G. triflora / G. scabra | AB755769 |
SP52 | (AC)14 | CTGAATACAAGGTTTAGCTCCTTCA | ATTAGCTCGGTTTTGCACTTAGAC | 291 | G. scabra | AB755770 |
SP53 | (AT)6 | GCCGTATCCAACAAAAGAAACA | TTACATTCCTCCCACTTAAAAGCC | 322 | G. scabra | AB755771 |
SP57 | (TA)12(GA)19 | CGTGTAATTCGGTTAAATCCCTTCC | AAAAGTGGTTATTCGGTTCGGGTT | 231 | G. scabra | AB755772 |
SP58 | (AG)17 | GATGCTAGATGGGCTAGAGGAAAGA | CAGTGCAAAGCAACTCGATAAGGT | 129 | G. scabra | AB755773 |
SP61 | (CA)13(TA)9 | ACCCTCACTAAACCTTCACAGCGT | CACAGAGCATATTACCGCTTCTTGA | 226 | G. scabra | AB755774 |
SP63 | (AC)7 | AGGAACAATCTTGACTAGCCTCGG | GAAGTGAGAGTTGGATTAGGGTGAAAA | 264 | G. triflora / G. scabra | AB755775 |
Tdssr3 | (AG)17 | TCAAAAGCTCAGTAACTAAACCTTCA | CCCAATAACAGTATAAGGACCAATCT | 271 | G. triflora / G. scabra | AB755776 |
Tssr3 | (CAA)7 | CATGTTGATAAAGACTGGAAAGAATG | CCAAAACTAGTCCAGGTAAAATTCTC | 154 | G. triflora / G. scabra | AB755777 |