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Table 1 List of primers used for SSR analysis

From: Construction of the first genetic linkage map of Japanese gentian (Gentianaceae)

Markers

Repeat motif

Sequence (5′→3′)

Product size (bp)

Amplification

Accession no.

Forward

Reverse

AC1

(AC)11.(AC)3.(TA)4

TATCAGCAAGATGGTGCATGGTTT

CCGAAAACAGGTAAAGTGTCCATGA

160

G. scabra

AB755678

AC2

(AT)3.(AC)11

AGTGGGCTGGTTGGGTTTAGATTC

TACTTCAGAAGGCTGGGGTCTACG

250

G. triflora / G. scabra

AB755679

AC62

(AC)6.(CA)8.(CA)7

TAGTTTCTTTGGTGTGGGACCTGG

GGAGGAGCGTTGCTATGTTGAAGT

129

G. triflora / G. scabra

AB755680

CA10

(CA)12(TA)3

CTGGAAAACACCCAACACACACAT

ATCCATGTCCTCTCCGTGTAGCTC

187

G. triflora / G. scabra

AB755681

CA28

(CA)9

GCAAAATCTTTTTATTTCTTGTGTGCG

CAGCACTGTGCAAGTCATATCTTGTG

134

G. triflora / G. scabra

AB755682

CA36

(CA)3.(CA)8

GTGGGGAAAACAAATAGCTCTTGAGG

TCGATCATTACCTGTTGTTTCAAGAT

131

G. triflora / G. scabra

AB755683

CA43

(CA)4(AC)7

ATTTCCTGAAACAATGAAGTCTTATG

CGTGAAACAAAGGGATCAAAAGTATC

200

G. triflora / G. scabra

AB755684

CD3

(GGA)5.(GA)3

GGATCAAAAGCGATGGATCTGTTC

ATGAAGCTCCTCACCTTGTCAACC

156

G. scabra

AB755685

CD12

(AGT)3.(AGT)7

CCCCACCACATGGACCATAATAAC

ATATGGAGCGGGAGGTGAAGTTTT

183

G. triflora / G. scabra

AB755686

CD26

(AG)3.(TAA)7(CAA)2

TCTCACAAGCAATGCAAGACCAAT

TGGTGTACTTAGCCCTTTCGTCGT

207

G. triflora / G. scabra

AB755687

CD35

(GCG)5.(CAG)3

TAGGGACGTACCCGACTCAAGAAA

GAGAGAAGTAGGAGGAAGAGCCGC

225

G. scabra

AB755688

CD41

(ACA)6

TCAACGTCCAGTCCGATAATGAGA

GAACCGCACAGTAAACGCCTAATC

240

G. triflora / G. scabra

AB755689

CD43

(AT)3.(AC)7(TA)6

TGTGCATCACTTTACTGCTTTCTCTTG

CCCAAGAATCAACTTGGCTTGAAC

244

G. triflora / G. scabra

AB755690

CD44

(AT)10

TACTTGGCGGAGAGGCTTATGAAA

ACACCACAAAAGGACAGTCGTTGA

244

G. triflora / G. scabra

AB755691

HC5

(CA)10

GCTTTAGCAACTCCCTCAATCCCT

GGGAAGTGAGTAATGTTCAGGTGTC

115

G. triflora / G. scabra

AB755692

HC6

(CA)14(TA)3.(TA)3

TCCTAACATCGGTGCGAGAATGTA

AGTTTGTTTCAGAACTTGGGGCAG

115

G. scabra

AB755693

HC7

(CA)10

ACGCTGAACCTGTGAGATTTCTTG

AACTCCCATGGACCAGACACATTT

119

G. triflora / G. scabra

AB755694

HC18

(AC)5.(AC)4

CAAAGCAGCAGCAAATATAGGGAA

GCTCAGCAATTGTCATTCCTGCTA

156

G. scabra

AB755695

HC20

(CA)3.(TG)6

TCTCGGTTGAATAGAACTCACCCC

TCGTAGACCTAGCACTTTCACGCA

158

G. scabra

AB755696

HC23

(GA)14

TAGAAGTGTGTGCAATTTGGGCAT

AAAAGCAGATAAAGGAAGAGGGGG

164

G. triflora / G. scabra

AB755697

HC26

(CA)9

AGCTTGACGTTGTCTGAGGGTTTC

GCAAAAGTTTAATCGTAAGCAGGCA

176

G. triflora / G. scabra

AB755698

HC29

(CA)5.(AC)3.(CA)7(TA)3

CACACGCTAACAAGCACACAGCTA

TTCCTGCTTTTGTCATCCAAAGGT

194

G. triflora / G. scabra

AB755699

HC41

(CA)10.(ACA)6

CGTTTCTTGAGCTTATTTTTGGCG

CATTTCAGATTTCTGCCACCCTTC

219

G. triflora / G. scabra

AB755700

HC48

(TA)3T(TA)4G(AT)3.(CA)7

GTGTATGGCTCGAATTGTGGACTG

AAGTGGGTCTTGGGGTGAAATACC

227

G. scabra

AB755701

HC49

(CA)9

CTTTTCCCATGCATAGAATCTCCG

GCTATGGCTGGCTAGTTTCCTTTC

229

G. scabra

AB755702

HC71

(CA)3CT(CA)11

TGAAGTCACAAACTGCGTGTTGAA

GTGGAACCTTTGTCTTCTTCCCCT

253

G. triflora / G. scabra

AB755703

HC72

(CA)10

AGGAATCATTTGAAGGGGTTGGTT

CCGGTAATTCCCTTGAGGCATAAT

256

G. scabra

AB755704

HC90

(CT)3.(AC)3(CA)12(TA)8

GGTAATGCTTATGCAAGTTTGAAGG

TATTCTCCGTGTGTCCAGCTATGG

285

G. triflora / G. scabra

AB755705

HC91

(CA)7.(CA)6.(CA)6.(CA)9.(CT)6.(CT)3

GCATTATTTTTCTGGAGCTAGGGGA

GGGCAGCCCTGGATAATACCTCTA

286

G. triflora / G. scabra

AB755706

HC100

(TA)5.(CA)8.(GA)3

GCCGTTTTTCCTGTCCTAAGGAGT

GGGCTTGGCGAGGTAGAACTAAAA

294

G. scabra

AB755707

HC103

(AG)18

ATTTCCTCCTGCTACATGAACCCA

GCTGAGAAAGAAGCCAACTCCAAA

299

G. triflora / G. scabra

AB755708

HG13

(CA)12

CAGTTCCACTGAAATTCCGCAGAT

TATTCGTTGAAAATGGCACCCTTC

102

G. scabra

AB755709

HG16

(TC)3.(CA)15(TA)3

CCATCAAATACCCATTACCACAGAA

TCTTATCTGAACGGGAAGCCCATA

259

G. triflora / G. scabra

AB755710

HG26

(AC)20(AT)11

GCAATTTCTTGAACCCGTAAACCA

TGTGGAAACACGTGATGCTGAATA

149

G. scabra

AB755711

HG42

(CA)15

GCATCATATCCCAAGGTCCATCTC

GCGTAGATACCATCTCCGGTCAAC

236

G. triflora / G. scabra

AB755712

RC13

(CA)14(TA)9.(AC)4.(TA)7

ACGGATACGGGAGTGTATTTGTAA

TTTATTTTAATCTTGCCCCGGACC

185

G. scabra

AB755713

RC25

(CA)11

ACCAAATAGGTGTATCCGTCCGTG

TCAATCCAGGTAAATGAGACTGCTTTC

142

G. scabra

AB755714

ReSN7

(TA)3.(CA)16(TA)4C(TA)4

CACTGCCGGTAAGATTGGATACCT

TATAAGGACTCAGTGTCGGGACGG

173

G. triflora / G. scabra

AB755715

ReSN22

(CA)13(TA)4.(CA)4

TGTCAGTCGGGTAAGCACTTTCAG

ATCAAAGCACTTGTCTGTCCTCCC

146

G. triflora / G. scabra

AB755716

ReSN84

(AC)11

TGTAAAGGGCAAAGGAGGAAAACA

AGCTGTAAGTTGAAAACGCCTTGA

110

G. triflora / G. scabra

AB755717

SA3

(CA)12

GTACCTCTGCACATTTGTTTGGTA

GCTCTTTTCTAGCCGTTTTATGTC

182

G. triflora / G. scabra

AB755718

SA4

(GA)8

CTTCTTCTCATTCCAGTTTCACCT

AGCACCTAGATTACACGTACACCA

254

G. triflora / G. scabra

AB755718

SA12

(CA)10

GTAGGACTCTGCACAAGAAGTAGGT

ACAATAAATATGGAGGCTGTAGGC

224

G. triflora / G. scabra

AB755719

SH9

(AG)15

CTAATGTAGGACTGAATGACCCG

GCAAGAAGTAAAACGTAAAGCCTG

200

G. triflora / G. scabra

AB755720

SH14

(AG)13

AGCACATTTCCCGCTACAAC

TCTTCAGGAGGAGGAGTTTGAGT

247

G. triflora / G. scabra

AB755721

SN7

(CA)8

AAGAAACTTGGGATGTTTCAGC

AAGCTGCATTTGTTGAAGATCA

197

G. triflora / G. scabra

AB755722

SN24

(CA)11

TGGCTTGTTTTGTATTGGAGTG

GTTCATTCCCCGGATAAGAAAT

157

G. triflora / G. scabra

AB755723

SN27

(AC)11

CATGGTGAGTTGGTTGAGAAAG

CCATGAATTCAGGTGAAAGTGA

167

G. triflora / G. scabra

AB755724

SN28

(CACC)7

CAGCAGACAATCAAAACTTTCAA

TAGTCTGTTCTGTGGGGAGTGA

166

G. triflora / G. scabra

AB755725

SN39

(AC)11

ATTCTGCTCTAGCCTTCCCTCT

GAACCACATGTCCTTCATCACT

152

G. triflora / G. scabra

AB755726

SN40

(CA)6

CCAAATGGAAAATATACAGCCA

GTTCTGTTTAGGGCTTGGGGT

152

G. triflora / G. scabra

AB755727

SN48

(AC)7

TGCTGTAATTTGTGTGGCATTT

AATTTAAAAGCCAGCCTTAGCC

224

G. triflora / G. scabra

AB755728

SN55

(AC)8

AGTTAAACCTGCAAAAATTGGG

GTTTTTGTTTATACGCGCACAC

161

G. triflora / G. scabra

AB755729

SN73

(CA)12

ACAAGAAGCCAGGTTCCACTTA

TCCGATTTGAGTTGTATTGCAT

167

G. triflora / G. scabra

AB755730

SN87

(CA)11

GCACACACACCACTCCATCTTA

TGGATCAAGTTCATTGTTGCAT

175

G. triflora / G. scabra

AB755731

SN124

(AG)12

ATGTAGGACTGAATGACCCGAC

AGATGCAAAGCTTGTGGTTATT

154

G. triflora / G. scabra

AB755732

SN143

(AC)10

CCAGAAAGGGTTTTAAATGCAA

TCCTTTCAATTGCTTGAGTTTTT

151

G. triflora / G. scabra

AB755733

SN157

(AC)11

CTCACCATCACTCGATACTGGA

ACGGAAGTTTACGGTGATTCTG

171

G. triflora / G. scabra

AB755734

SN175

(CA)8

CACCAACACAAAGTTAGCTCCA

ACAGGCTTATGGGCTGTATGAG

162

G. triflora / G. scabra

AB755735

SN181

(CA)6

TTCAGTTCCACCCACACTACAC

ACACATGGTAGCTTCCCTTGAA

204

G. triflora / G. scabra

AB755736

SN182

(AG)13

AATAGAGGCGTCTTCATCATCA

CGTAACGATAAATCCCGCTAAA

151

G. triflora / G. scabra

AB755737

SN186

(CA)6

TGGTCATTTTGTGGAGTTTCAG

TGGCAGAAGAGGTGTAGAACAA

204

G. triflora / G. scabra

AB755738

SN224

(AC)8

TATGCCTTTCGTGCTCTGACTA

GGTGATAAGCTCTTATGTTGCG

151

G. triflora / G. scabra

AB755739

SN238

(AC)12

AAAAGACCAAACTTTCCCTGAC

GCTAAGCGAGCCTAAGATGTTC

154

G. triflora / G. scabra

AB755740

SN260

(CA)8(TA)5

CACCATAACTCGAATGTCACTG

AGCGGGCGTTACAATTAATATC

241

G. triflora / G. scabra

AB755741

SN282

(AC)6

TGGCAGAAGAGGTGTAGAACAA

TGGTCATTTTGTGGAGTTTCAG

205

G. triflora / G. scabra

AB755742

SN285

(AC)12

CCACTGATTGATGCATTTCATA

CGTTATTCTGTGCTTGAACCTG

157

G. triflora / G. scabra

AB755743

SN327

(AC)11

CAGGAGTACAACTGAGGCAGAG

ACCCAACTTCTCTCAAACGAAA

232

G. triflora / G. scabra

AB755744

SN328

(CA)12

AATTCTCCTCTTCTGCTTTTGC

TCAATTCATTCATTCAGAACCG

169

G. triflora / G. scabra

AB755745

SN336

(AC)13(AT)9

AAAAGAAAAAGGATGTTTGAGCA

GCAAGAAACACAACACAAGCAT

193

G. triflora / G. scabra

AB755746

SN343

(CA)12

TGGTGCAACAGGTAGATAACACA

GTTGCGTACTGACTCCTGTCTG

189

G. triflora / G. scabra

AB755747

SN345

(AC)7

ACTAGACCCTCACCAAATGCC

TGTCCCTATTCTGTTTATGCTCTT

181

G. triflora / G. scabra

AB755748

SN355

(AC)8

GACTCCATATTGCACTGGACAA

TCCCCCTCTGTACACATATCCT

214

G. triflora / G. scabra

AB755749

SN381

(AC)6

GCAAAAGAAAGCTCAAACGAAT

CACAATCTCTTGGTCCCTTTGT

172

G. triflora / G. scabra

AB755750

SN388

(CA)11

CTGCACAAATAGCAAAAGCATC

TACCCGACGATGGTAATTGTAA

167

G. triflora / G. scabra

AB755751

SN463

(AC)8

GGAAGAACTGAAGCTTCTGGAG

CAAGGAGACAACACTTGACACAG

164

G. triflora / G. scabra

AB755752

SN527

(TC)4(AC)8

AGCTCCCAAAGTATCACTCCAA

CTGACATTTTACCAAGCCACAA

185

G. triflora / G. scabra

AB755753

SN563

(AT)7

CATGTCCTCTGTGAGGTCAAAA

GTCGGATTTTGGAGATTCGTAG

158

G. triflora / G. scabra

AB755754

SN578

(CA)8

TCCCCCTCTGTACACATATCCT

GACTCCATATTGCACTGGACAA

214

G. triflora / G. scabra

AB755755

SN583

(CA)10

TTTCATTGCACCTGGACATAAG

AAAGTCAATGAATTCCAAAGGC

151

G. triflora / G. scabra

AB755756

SP1

(CA)13

ATGATGATTGGTCAGCCTCGG

TGCTGGTTTGGTATTGAACTCTTCG

216

G. triflora / G. scabra

AB755757

SP8

(AC)12

CTCTGCAACCAAACAATACCCCAT

GGAAGGGGATGAATCGAGGAGTTA

327

G. triflora / G. scabra

AB755758

SP15

(GA)17

GGATTTCGAGCGATTTTCTACTC

GCAGAAGTTTTCCTTACGATGG

248

G. triflora / G. scabra

AB755759

SP17

(AC)7

AAAACTCAGGAAAGCCGCAATA

AATAGCCTCCCAAGCACCCTATAA

181

G. triflora / G. scabra

AB755760

SP21

(AC)13

GGGACCAACACCATTATTTCCCTT

GGAAGATCACATTTATGCCCCTCA

307

G. triflora / G. scabra

AB755761

SP28

(TG)12.(GA)26

CCGCGTAAGTGGCATACTCATAA

GTTACTTCCTTCAACCAGGGTATCTG

334

G. triflora / G. scabra

AB755762

SP29

(AC)10

TGTAGTTGAGCAAGCCAAATCTGC

GTGTAAGCCCAATAAGTCAATTCATGC

212

G. triflora / G. scabra

AB755763

SP37

(AC)11(CA)6

CAGAAGGCTGGGGTCTACGAAATA

CCTAGTGGGCTGGTTGGGTTTAG

250

G. triflora / scabra

AB755764

SP43

(AC)15

ACTTGGGGCAGCAGAAACTTAACA

TTGACCTAACATCGGTGCGAGAAT

107

G. scabra

AB755765

SP44

(CA)8.(TA)11(CA)12

CGAATAAAAGGAACCGAACCCAAT

AAGGGACGCCGCTACTTTCTACAG

281

G. scabra

AB755766

SP47

(CA)11

GAAAGTTGAATTACTTGCAGGCTC

TTCATATTAGACGGGTTTGGGTC

280

G. scabra

AB755767

SP48

(AC)10

CCGATTCAACGCCTAGCAACT

TCAAGAAACACGATACTGATGTGGG

271

G. triflora / G. scabra

AB755768

SP49

(AC)10(AT)6

TCCGTTGTTCTTCGTAAAGGTTGG

AGAGTGATTTCTTCTGGCTCGTTTCTT

337

G. triflora / G. scabra

AB755769

SP52

(AC)14

CTGAATACAAGGTTTAGCTCCTTCA

ATTAGCTCGGTTTTGCACTTAGAC

291

G. scabra

AB755770

SP53

(AT)6

GCCGTATCCAACAAAAGAAACA

TTACATTCCTCCCACTTAAAAGCC

322

G. scabra

AB755771

SP57

(TA)12(GA)19

CGTGTAATTCGGTTAAATCCCTTCC

AAAAGTGGTTATTCGGTTCGGGTT

231

G. scabra

AB755772

SP58

(AG)17

GATGCTAGATGGGCTAGAGGAAAGA

CAGTGCAAAGCAACTCGATAAGGT

129

G. scabra

AB755773

SP61

(CA)13(TA)9

ACCCTCACTAAACCTTCACAGCGT

CACAGAGCATATTACCGCTTCTTGA

226

G. scabra

AB755774

SP63

(AC)7

AGGAACAATCTTGACTAGCCTCGG

GAAGTGAGAGTTGGATTAGGGTGAAAA

264

G. triflora / G. scabra

AB755775

Tdssr3

(AG)17

TCAAAAGCTCAGTAACTAAACCTTCA

CCCAATAACAGTATAAGGACCAATCT

271

G. triflora / G. scabra

AB755776

Tssr3

(CAA)7

CATGTTGATAAAGACTGGAAAGAATG

CCAAAACTAGTCCAGGTAAAATTCTC

154

G. triflora / G. scabra

AB755777