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Table 3 Keyword search in BLASTX results

From: A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings

  Isotig group  
Search term c m s cm cs ms cms
”Drought” 4 3 8 5 13 3 103
”Water-deficit” 0 0 4 0 5 0 29
”Water-stress” 6 2 6 4 6 1 109
”Osmotic-stress” 4 1 6 2 7 2 58
”Heat-stress” 2 0 1 0 2 0 27
”Heat-shock” 24 17 31 21 23 15 466
”Dehydration” 20 7 17 14 18 1 205
”Abscisic acid” 7 1 8 5 10 2 142
”ABA-responsive”1 0 0 2 1 1 1 25
”ABA-induced” 1 0 2 2 1 0 27
”ABA receptor” 0 0 2 0 0 0 20
”Pyrabactinresistance 1” 0 0 2 0 0 0 10
”Snf1-relatedprotein kinases”2 4 2 2 2 3 7 69
”DREB1”3 2 0 0 1 1 0 9
”DREB2” 2 0 0 2 2 0 14
”C-repeat binding” 0 0 0 1 1 0 4
”ERD”4 7 4 9 3 8 2 112
”CIPK”5 2 3 2 0 2 6 47
”CDPK”6 0 2 1 7 1 0 39
”CBL1” 7 5 1 0 3 6 1 72
”PKS3”8 0 2 0 0 2 0 12
Different isotigs 66 33 69 58 71 32 1,174
  1. Number of isotigs (non-singleton PUTs) with a BLASTX hit containing a keyword for each group (see Figure3). c = control, m = mild stress, s = severe stress, cm = control and mild stress, cs = control and severe stress, ms = mild and severe stress, cms = control, mild and severe stress.
  2. 1ABA = abscisic acid.
  3. 2Snf = sucrose non-fermenting.
  4. 3DREB = dehydration-responsive element-binding.
  5. 4ERD = early responsive to dehydration.
  6. 5CIPK = CBL-interacting protein kinase.
  7. 6CDPK = calcium-dependent protein kinase.
  8. 7CBL = calcineurin B-like protein.
  9. 8PKS = phytochrome kinase substrate.