Skip to main content

Table 4 BLASTX and Blast2GO results divided by isotig length

From: A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings

  All PUTs < 501 501 – 1,000 1,001 – 1,999 > 2,000
Number of PUTs 170,859 106,296 42,760 19,589 2,214
Total sequence [Mbp] 96.5 35 26.4 29.7 5.4
Hits with nr 27.3% 13.5% 36.9% 75.5% 87.8%
Hits with ara 19.6% 7.9% 25.1% 64.4% 82.6%
Hits with picea 19.6% 8.5% 26.3% 58.7% 71.4%
Isotigs with assigned GO term 23.2% 11.9% 26.6% 63.9% 82%
  1. Results of similarity searches with BLASTX and functional annotation using Blast2GO subdivided by transcript length in bp.