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Table 5 Groups of SNPs

From: A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings

Origin of reads confirming the reference nucleotide

c

i

c

i

c

ci

i

ci

ci

 

Origin of reads confirming the variant nucleotide

c

i

i

c

ci

c

ci

i

ci

 

Group name

c/c

i/i

c/i

ci/c

ci/i

ci/ci

 
  1. Partitioning of SNPs into groups depending on the origin (coastal vs. interior) of sequence reads. c: only reads of coastal libraries; i: only reads of interior libraries, ci: reads of coastal as well as interior libraries; ci/ci: both possible nucleotides were confirmed by reads of coastal and interior libraries; c/i: one of the possible nucleotides at the SNP position was confirmed only by reads of coastal libraries, the other nucleotide only by reads of interior libraries; etc.