|
Origin of reads confirming the reference nucleotide
|
c
|
i
|
c
|
i
|
c
|
ci
|
i
|
ci
|
ci
| |
|---|
|
Origin of reads confirming the variant nucleotide
|
c
|
i
|
i
|
c
|
ci
|
c
|
ci
|
i
|
ci
| |
|---|
|
Group name
|
c/c
|
i/i
|
c/i
|
ci/c
|
ci/i
|
ci/ci
| |
- Partitioning of SNPs into groups depending on the origin (coastal vs. interior) of sequence reads. c: only reads of coastal libraries; i: only reads of interior libraries, ci: reads of coastal as well as interior libraries; ci/ci: both possible nucleotides were confirmed by reads of coastal and interior libraries; c/i: one of the possible nucleotides at the SNP position was confirmed only by reads of coastal libraries, the other nucleotide only by reads of interior libraries; etc.
