Skip to main content

Table 1 Experimentally derived annotation of the Klebsiella pneumoniae MGH 78578 genome

From: Multiple-omic data analysis of Klebsiella pneumoniae MGH 78578 reveals its transcriptional architecture and regulatory features

ORFs

5194/411*

tRNAs

86 (86)

rRNAs

25 (25)

sRNAs

15 (1)

RNAP binding sites

2677

RpoD binding sites

1227/143*

RpoS binding sites

1066/82*

TSS

3585/263*

pORF

119/40*

RTSs – total

3660

RTSs – exponential phase

678

RTSs – stationary phase

1003

RTSs – both phases

1979

Antisense transcripts

185/38*

Leaderless mRNAs

83

  1. Numbers with asterisks (*) before the forward slash denote the total number of each feature detected in our data set, while numbers after the slash denote the number of each feature located on one of the 5 plasmids. Example: out of 5194 ORFs that were detected, 411 of them are located on a plasmid. The number of ORFs was taken from the GenBank annotation at the time of data analysis. All other values were derived experimentally as part of this study except for numbers in parentheses, which were taken from the current GenBank annotation. Abbreviations: pORF, putative ORF; RTSs, RNAP-guided transcript segments.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us